BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0635700 Os06g0635700|AK107643
         (312 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0635700  Conserved hypothetical protein                      329   2e-90
Os06g0635800                                                      208   4e-54

>Os06g0635700 Conserved hypothetical protein
          Length = 312

 Score =  329 bits (843), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 191/299 (63%), Positives = 191/299 (63%)

Query: 14  VPKKRKVRTASTLXXXXXXXXXXXXVAEATFXXXXXXXXXXXXXXXXXIPTEVTVGXXXX 73
           VPKKRKVRTASTL            VAEATF                 IPTEVTVG    
Sbjct: 14  VPKKRKVRTASTLSGSGGPGRGRGRVAEATFVGRGRGVWSVRGRGRGRIPTEVTVGTPSP 73

Query: 74  XXXXXXXXXXXXXLIQSNVVISPVPPTLAASGVAAWPPVXXXXXXXXXXXXXXXXXXVLT 133
                        LIQSNVVISPVPPTLAASGVAAWPPV                  VLT
Sbjct: 74  SAPTPAPASATAPLIQSNVVISPVPPTLAASGVAAWPPVPAIPELTTAAAAPLPEKPVLT 133

Query: 134 AHDVVMATLFPNGVFSYTAGSSHAPPPPVASGSFFQEVIPPGGVPTNYAIHEAPDFDPNV 193
           AHDVVMATLFPNGVFSYTAGSSHAPPPPVASGSFFQEVIPPGGVPTNYAIHEAPDFDPNV
Sbjct: 134 AHDVVMATLFPNGVFSYTAGSSHAPPPPVASGSFFQEVIPPGGVPTNYAIHEAPDFDPNV 193

Query: 194 FFADVPDGEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDVPSS 253
           FFADVPDGEQ                                            IDVPSS
Sbjct: 194 FFADVPDGEQDELVLLSLTSTLLDIDNSLTLVADDAASSAQAAVDVASSSAQAAIDVPSS 253

Query: 254 SVLAVVDIPSSSAQAAIDVPASLAQAATDVASSSTQGAAGNERPIMFDFDLNEPASNFE 312
           SVLAVVDIPSSSAQAAIDVPASLAQAATDVASSSTQGAAGNERPIMFDFDLNEPASNFE
Sbjct: 254 SVLAVVDIPSSSAQAAIDVPASLAQAATDVASSSTQGAAGNERPIMFDFDLNEPASNFE 312



>Os06g0635800 
          Length = 204

 Score =  208 bits (529), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 116/187 (62%), Positives = 129/187 (68%), Gaps = 5/187 (2%)

Query: 131 VLTAHDVVMATLFPNGVFSYTAGSSHA-----PPPPVASGSFFQEVIPPGGVPTNYAIHE 185
           +LTAH+VVMATLFPNG+FSYTAG SHA     PPPP AS SFFQ VIPPGGVPTNYA+HE
Sbjct: 18  ILTAHEVVMATLFPNGIFSYTAGPSHALPPPPPPPPAASDSFFQVVIPPGGVPTNYAVHE 77

Query: 186 APDFDPNVFFADVPDGEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 245
           A DFDPN+FFADVPDGEQ                                          
Sbjct: 78  ALDFDPNIFFADVPDGEQGEPVLLSSMSMLLDVDTSSSLAADDASSSAQAAVDVASLSAQ 137

Query: 246 XXIDVPSSSVLAVVDIPSSSAQAAIDVPASLAQAATDVASSSTQGAAGNERPIMFDFDLN 305
             +DVPSSSV A +++PSSSAQAAIDVP+S AQAATDVASS TQGAAGNERPI+FDFDLN
Sbjct: 138 AAVDVPSSSVQAFINVPSSSAQAAIDVPSSSAQAATDVASSLTQGAAGNERPIVFDFDLN 197

Query: 306 EPASNFE 312
           EP+SN+E
Sbjct: 198 EPSSNYE 204



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,384,570
Number of extensions: 271588
Number of successful extensions: 1209
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1201
Number of HSP's successfully gapped: 4
Length of query: 312
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 211
Effective length of database: 11,762,187
Effective search space: 2481821457
Effective search space used: 2481821457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)