BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0632200 Os06g0632200|AK072921
         (307 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0632200  Conserved hypothetical protein                      161   7e-40
AK072433                                                          161   7e-40

>Os06g0632200 Conserved hypothetical protein
          Length = 307

 Score =  161 bits (407), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 125/307 (40%), Positives = 125/307 (40%)

Query: 1   PVPSLPRRADQAGGDRGAVHRHPGGGRRGLQALXXXXXXXXXXXXXXXXXXXXXLLQVRG 60
           PVPSLPRRADQAGGDRGAVHRHPGGGRRGLQAL                     LLQVRG
Sbjct: 1   PVPSLPRRADQAGGDRGAVHRHPGGGRRGLQALAPDAADQGEEAGEAAGHAGEDLLQVRG 60

Query: 61  DEPGGVAQAEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXX 120
           DEPGGVAQAEH                                  P              
Sbjct: 61  DEPGGVAQAEHGGAAGVVQRRRRGEERGDGDRRRAVGQRAVVREQPVRAHLRGVAGARVV 120

Query: 121 XXXXXXXXDDGDVGRHXXXXXXXXXXXXXXXXXTRPGEPGQPRDRHLXXXXXXXXXRRHQ 180
                   DDGDVGRH                 TRPGEPGQPRDRHL         RRHQ
Sbjct: 121 RPEAVPAADDGDVGRHGAPVAVGGDGVGEEDPGTRPGEPGQPRDRHLGGGGGGGEGRRHQ 180

Query: 181 VLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVPVHAREARRQ 240
           VL                                             AGVPVHAREARRQ
Sbjct: 181 VLPRQRAQPRAAPPDGDWGGVPGAAGGRRRRPRRRHRLHWRRVQLRRAGVPVHAREARRQ 240

Query: 241 DEPGVQGRRAGGVPDAHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASLPWNG 300
           DEPGVQGRRAGGVPDAHQG                                  ASLPWNG
Sbjct: 241 DEPGVQGRRAGGVPDAHQGRLRLRLRRHRRPHAAHEDAHPRPWIRPRPHPCRRASLPWNG 300

Query: 301 ATNLPCV 307
           ATNLPCV
Sbjct: 301 ATNLPCV 307



>AK072433 
          Length = 307

 Score =  161 bits (407), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 125/307 (40%), Positives = 125/307 (40%)

Query: 1   PVPSLPRRADQAGGDRGAVHRHPGGGRRGLQALXXXXXXXXXXXXXXXXXXXXXLLQVRG 60
           PVPSLPRRADQAGGDRGAVHRHPGGGRRGLQAL                     LLQVRG
Sbjct: 1   PVPSLPRRADQAGGDRGAVHRHPGGGRRGLQALAPDAADQGEEAGEAAGHAGEDLLQVRG 60

Query: 61  DEPGGVAQAEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXX 120
           DEPGGVAQAEH                                  P              
Sbjct: 61  DEPGGVAQAEHGGAAGVVQRRRRGEERGDGDRRRAVGQRAVVREQPVRAHLRGVAGARVV 120

Query: 121 XXXXXXXXDDGDVGRHXXXXXXXXXXXXXXXXXTRPGEPGQPRDRHLXXXXXXXXXRRHQ 180
                   DDGDVGRH                 TRPGEPGQPRDRHL         RRHQ
Sbjct: 121 RPEAVPAADDGDVGRHGAPVAVGGDGVGEEDPGTRPGEPGQPRDRHLGGGGGGGEGRRHQ 180

Query: 181 VLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVPVHAREARRQ 240
           VL                                             AGVPVHAREARRQ
Sbjct: 181 VLPRQRAQPRAAPPDGDWGGVPGAAGGRRRRPRRRHRLHWRRVQLRRAGVPVHAREARRQ 240

Query: 241 DEPGVQGRRAGGVPDAHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASLPWNG 300
           DEPGVQGRRAGGVPDAHQG                                  ASLPWNG
Sbjct: 241 DEPGVQGRRAGGVPDAHQGRLRLRLRRHRRPHAAHEDAHPRPWIRPRPHPCRRASLPWNG 300

Query: 301 ATNLPCV 307
           ATNLPCV
Sbjct: 301 ATNLPCV 307



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.140    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,668,455
Number of extensions: 135838
Number of successful extensions: 517
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 513
Number of HSP's successfully gapped: 4
Length of query: 307
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 206
Effective length of database: 11,762,187
Effective search space: 2423010522
Effective search space used: 2423010522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)