BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0622500 Os06g0622500|Os06g0622500
         (724 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0622500  Tetratricopeptide-like helical domain containi...  1501   0.0  
Os02g0656300  Similar to Anaphase-promoting complex subunit ...   115   9e-26

>Os06g0622500 Tetratricopeptide-like helical domain containing protein
          Length = 724

 Score = 1501 bits (3886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 716/724 (98%), Positives = 716/724 (98%)

Query: 1   MVDRVHGSLRLFMHRNAVFLCERLCAQFPAETNVQLLATCYLHNNQPYAAYHILKGFFNT 60
           MVDRVHGSLRLFMHRNAVFLCERLCAQFPAETNVQLLATCYLHNNQPYAAYHILKGFFNT
Sbjct: 1   MVDRVHGSLRLFMHRNAVFLCERLCAQFPAETNVQLLATCYLHNNQPYAAYHILKGFFNT 60

Query: 61  FPKYKECMFQVVQQGTTFLEYTGRVEAAAEQFVQALTLDPLLWAAYEELCILGVAEDANE 120
           FPKYKECMFQVVQQGTTFLEYTGRVEAAAEQFVQALTLDPLLWAAYEELCILGVAEDANE
Sbjct: 61  FPKYKECMFQVVQQGTTFLEYTGRVEAAAEQFVQALTLDPLLWAAYEELCILGVAEDANE 120

Query: 121 CFSEATALRLQQELTSTSNVEKSNFVNENRFLSSNVSASFGDSPKQIKQLHANTTAEVSG 180
           CFSEATALRLQQELTSTSNVEKSNFVNENRFLSSNVSASFGDSPKQIKQLHANTTAEVSG
Sbjct: 121 CFSEATALRLQQELTSTSNVEKSNFVNENRFLSSNVSASFGDSPKQIKQLHANTTAEVSG 180

Query: 181 YPHVKSTALHMQNGAPSNLSQFDTPSPTSTQASGIAPPPLFRNMHAYQNTAGGNAPSKPK 240
           YPHVKSTALHMQNGAPSNLSQFDTPSPTSTQASGIAPPPLFRNMHAYQNTAGGNAPSKPK
Sbjct: 181 YPHVKSTALHMQNGAPSNLSQFDTPSPTSTQASGIAPPPLFRNMHAYQNTAGGNAPSKPK 240

Query: 241 VNAPNLTLRRKYIDEAGLKKVSGRLFNQSSDSVPRRSARLSRDTTINSNSNISQFGGNGT 300
           VNAPNLTLRRKYIDEAGLKKVSGRLFNQSSDSVPRRSARLSRDTTINSNSNISQFGGNGT
Sbjct: 241 VNAPNLTLRRKYIDEAGLKKVSGRLFNQSSDSVPRRSARLSRDTTINSNSNISQFGGNGT 300

Query: 301 DHSSGNRYHVVDEMWTDNVXXXXXXXXIVDGRYPEQEKSERVLSQDSKLAIGIRELMALL 360
           DHSSGNRYHVVDEMWTDNV        IVDGRYPEQEKSERVLSQDSKLAIGIRELMALL
Sbjct: 301 DHSSGNRYHVVDEMWTDNVTSTSSSTSIVDGRYPEQEKSERVLSQDSKLAIGIRELMALL 360

Query: 361 RTLGEGYRLSCLFKCQEALEVYRKLPEAQFNTGWVLCQVGKTYFELVNYLEADHFFELAH 420
           RTLGEGYRLSCLFKCQEALEVYRKLPEAQFNTGWVLCQVGKTYFELVNYLEADHFFELAH
Sbjct: 361 RTLGEGYRLSCLFKCQEALEVYRKLPEAQFNTGWVLCQVGKTYFELVNYLEADHFFELAH 420

Query: 421 RLSPCTLEGMDIYSTVLYHLNEEMRLSYLAQDLVSIDRLSPQAWCAVGNCFALRKDHETA 480
           RLSPCTLEGMDIYSTVLYHLNEEMRLSYLAQDLVSIDRLSPQAWCAVGNCFALRKDHETA
Sbjct: 421 RLSPCTLEGMDIYSTVLYHLNEEMRLSYLAQDLVSIDRLSPQAWCAVGNCFALRKDHETA 480

Query: 481 LKNFQRAVQLDSRVAYAHTLCGHEYSALEDYENSIKLYRSALQVDERHYNAWYGLGVVYL 540
           LKNFQRAVQLDSRVAYAHTLCGHEYSALEDYENSIKLYRSALQVDERHYNAWYGLGVVYL
Sbjct: 481 LKNFQRAVQLDSRVAYAHTLCGHEYSALEDYENSIKLYRSALQVDERHYNAWYGLGVVYL 540

Query: 541 RQEKFEFAEHHFRRAFQINPCSSVLMCYLGMALHALKRNEEALEMMENAIFADKKNPLPK 600
           RQEKFEFAEHHFRRAFQINPCSSVLMCYLGMALHALKRNEEALEMMENAIFADKKNPLPK
Sbjct: 541 RQEKFEFAEHHFRRAFQINPCSSVLMCYLGMALHALKRNEEALEMMENAIFADKKNPLPK 600

Query: 601 YQKALILLGLQKYPDALDELERLKEIAPHESSMYALMGKIYKQLNILDKAVFCFGIALDL 660
           YQKALILLGLQKYPDALDELERLKEIAPHESSMYALMGKIYKQLNILDKAVFCFGIALDL
Sbjct: 601 YQKALILLGLQKYPDALDELERLKEIAPHESSMYALMGKIYKQLNILDKAVFCFGIALDL 660

Query: 661 KPPAADVAIIKSKEMEKAQGWIASVSQLCSTLKGQSNHHDGGRLAIIAHEVRQKALSSTK 720
           KPPAADVAIIKSKEMEKAQGWIASVSQLCSTLKGQSNHHDGGRLAIIAHEVRQKALSSTK
Sbjct: 661 KPPAADVAIIKSKEMEKAQGWIASVSQLCSTLKGQSNHHDGGRLAIIAHEVRQKALSSTK 720

Query: 721 QLAI 724
           QLAI
Sbjct: 721 QLAI 724



>Os02g0656300 Similar to Anaphase-promoting complex subunit 8-like protein
          Length = 597

 Score =  115 bits (289), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 114/215 (53%), Gaps = 5/215 (2%)

Query: 376 QEALEVYRKLPEAQFNTGWVLCQVGKTYFELVNYLEADHFFELAHRLSPCTLEGMDIYST 435
           +EAL+ Y +L      + ++  Q+    + + +  EAD  FE   R  P  ++ MD+YS 
Sbjct: 272 EEALKRYERLMGVFRCSDYIQAQIATVQYSMRDLDEADMIFEELLRTDPFRVDSMDVYSN 331

Query: 436 VLYHLNEEMRLSYLAQDLVSIDRLSPQAWCAVGNCFALRKDHETALKNFQRAVQLDSRVA 495
           +LY       LS+LA  +   D+  P++ C + N ++L+  HE ++  FQRA++L+ +  
Sbjct: 332 LLYAKESSTALSFLAHRVFLTDKYRPESCCIIANYYSLKGQHEKSVLYFQRALKLNRKYL 391

Query: 496 YAHTLCGHEYSALEDYENSIKLYRSALQVDERHYNAWYGLGVVYLRQEKFEFAEHHFRRA 555
            A TL GHE+  L++   +I  YR A+ ++ R Y AWYGLG +Y       +A ++FR++
Sbjct: 392 SAWTLMGHEFVELKNTPAAIDAYRRAVDINPRDYRAWYGLGQIYEMMGMPFYAVYYFRKS 451

Query: 556 FQINPCSSVLMCYLGMALHALKRNEEALEMMENAI 590
             + P  + L   +     +     + L+M+E AI
Sbjct: 452 SYLQPNDARLWNAMAQCYES-----DQLQMIEEAI 481



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,755,062
Number of extensions: 991520
Number of successful extensions: 2707
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2709
Number of HSP's successfully gapped: 2
Length of query: 724
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 616
Effective length of database: 11,396,689
Effective search space: 7020360424
Effective search space used: 7020360424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)