Os06g0622500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os06g0622500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.4 | 0.19 | 10.9 | -0.0846 | 0.337 | 0.326 | -0.376 | 0.797 | -0.0445 | 12.9 | 21.5 | 2016 | -- | -- |
| 17.87 | 0.197 | 10.9 | -0.251 | 0.32 | 0.248 | -0.47 | -- | -0.0826 | 12.5 | 22.03 | 2192 | -- | -- |
| 16.96 | 0.192 | 10.9 | -0.0886 | 0.341 | 0.328 | -- | 0.839 | -0.0435 | 13 | 21.46 | 2080 | -- | -- |
| 18.39 | 0.2 | 10.9 | -0.293 | 0.344 | 0.248 | -- | -- | -0.0995 | 13.1 | 22.13 | 2227 | -- | -- |
| 22.87 | 0.224 | 10.9 | -0.235 | -- | 0.275 | -- | 0.19 | -0.0768 | -- | 21.46 | 2080 | -- | -- |
| 19.93 | 0.209 | 10.9 | -0.173 | 0.326 | -- | -0.397 | -- | -0.0129 | 13 | -- | -- | -- | -- |
| 20.58 | 0.212 | 10.9 | -0.187 | 0.328 | -- | -- | -- | -0.0149 | 13.1 | -- | -- | -- | -- |
| 23.07 | 0.225 | 10.9 | -0.267 | -- | 0.251 | -- | -- | -0.093 | -- | 22.13 | 2227 | -- | -- |
| 20.3 | 0.21 | 10.9 | -- | 0.35 | 0.165 | -- | -- | -0.0564 | 13.1 | 23.1 | 2230 | -- | -- |
| 27.24 | 0.244 | 10.9 | -0.2 | -- | -- | -- | -- | -0.0214 | -- | -- | -- | -- | -- |
| 21.5 | 0.217 | 10.9 | -- | 0.331 | -- | -- | -- | 0.00596 | 13.2 | -- | -- | -- | -- |
| 24.9 | 0.233 | 10.9 | -- | -- | 0.224 | -- | -- | -0.0563 | -- | 22.13 | 2227 | -- | -- |
| 28.29 | 0.248 | 10.9 | -- | -- | -- | -- | -- | 0.000715 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.18 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 2 | 16.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 3 | 16.34 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 4 | 16.39 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 7 | 16.43 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 8 | 16.43 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 9 | 16.43 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 17 | 16.51 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 20 |
| 62 | 16.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 70 | 16.71 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 71 | 16.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 79 | 16.72 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 83 | 16.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 120 | 16.76 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 122 | 16.77 | temperature | 25 | 720 | < th | dose dependent | sin | 17 | NA |
| 124 | 16.77 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 17 |
| 157 | 16.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 214 | 16.86 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 225 | 16.86 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 233 | 16.86 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 260 | 16.88 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 312 | 16.91 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 349 | 16.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 522 | 17.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 548 | 17.01 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 551 | 17.01 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 575 | 17.02 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 633 | 17.05 | temperature | 25 | 270 | < th | dose dependent | sin | 11 | NA |
| 707 | 17.07 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 752 | 17.09 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 783 | 17.10 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 842 | 17.12 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 908 | 17.13 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 996 | 17.16 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 5 |