BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0604600 Os06g0604600|AK069255
         (131 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0604600  Conserved hypothetical protein                      149   5e-37

>Os06g0604600 Conserved hypothetical protein
          Length = 131

 Score =  149 bits (377), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 77/103 (74%), Positives = 77/103 (74%)

Query: 29  VLFSLCRANKPPHHDDAPARLRPCLXXXXXXXXXXXXXXXXXXVRFAADVVDNDSNASSR 88
           VLFSLCRANKPPHHDDAPARLRPCL                  VRFAADVVDNDSNASSR
Sbjct: 29  VLFSLCRANKPPHHDDAPARLRPCLSSSEKRKREKARRGSKKRVRFAADVVDNDSNASSR 88

Query: 89  PAAAEPSCRNXXXXXXXXMPANREALYRGMLRGRSMLRVACSY 131
           PAAAEPSCRN        MPANREALYRGMLRGRSMLRVACSY
Sbjct: 89  PAAAEPSCRNAAATAATAMPANREALYRGMLRGRSMLRVACSY 131



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.133    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,939,855
Number of extensions: 69642
Number of successful extensions: 182
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 2
Length of query: 131
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 42
Effective length of database: 12,388,755
Effective search space: 520327710
Effective search space used: 520327710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 150 (62.4 bits)