BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0601000 Os06g0601000|AK071330
         (316 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0601000  Homeodomain-like containing protein                 468   e-132

>Os06g0601000 Homeodomain-like containing protein
          Length = 316

 Score =  468 bits (1204), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 250/290 (86%), Positives = 250/290 (86%)

Query: 27  PLLRRSPRGVACALRRRPSKYKNKIQNXXXXXXXXXXXXXXXXXXALEALFKQLEEDLKN 86
           PLLRRSPRGVACALRRRPSKYKNKIQN                  ALEALFKQLEEDLKN
Sbjct: 27  PLLRRSPRGVACALRRRPSKYKNKIQNEEVVVEDDIGGGGEDDDDALEALFKQLEEDLKN 86

Query: 87  DDLSVEDDDDGISEEDMARFEQELXXXXXXXXXXXXXXXXXXXXXXAYGNDEKTDEIKRP 146
           DDLSVEDDDDGISEEDMARFEQEL                      AYGNDEKTDEIKRP
Sbjct: 87  DDLSVEDDDDGISEEDMARFEQELAEAIGDIADADESGEGSSLGSEAYGNDEKTDEIKRP 146

Query: 147 ELKNWQLKRLARALKIGRRKTSIKNLAGELGLDRTLVIELLRNPPPKLLFMSDSLPDEDP 206
           ELKNWQLKRLARALKIGRRKTSIKNLAGELGLDRTLVIELLRNPPPKLLFMSDSLPDEDP
Sbjct: 147 ELKNWQLKRLARALKIGRRKTSIKNLAGELGLDRTLVIELLRNPPPKLLFMSDSLPDEDP 206

Query: 207 SKPEIKEIEPSPVVDNADVTETKPQTELPVHVMCAEWSSQKRLKKVQLETLERVYSRTKR 266
           SKPEIKEIEPSPVVDNADVTETKPQTELPVHVMCAEWSSQKRLKKVQLETLERVYSRTKR
Sbjct: 207 SKPEIKEIEPSPVVDNADVTETKPQTELPVHVMCAEWSSQKRLKKVQLETLERVYSRTKR 266

Query: 267 PTNTMISSIVQVTSLPRKTIVKWFEDRREQDGVPDHRVAFKRSLSETIAS 316
           PTNTMISSIVQVTSLPRKTIVKWFEDRREQDGVPDHRVAFKRSLSETIAS
Sbjct: 267 PTNTMISSIVQVTSLPRKTIVKWFEDRREQDGVPDHRVAFKRSLSETIAS 316



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,058,633
Number of extensions: 343827
Number of successful extensions: 1164
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1161
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 215
Effective length of database: 11,762,187
Effective search space: 2528870205
Effective search space used: 2528870205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)