Os06g0601000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os06g0601000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.5 | 0.35 | 11.8 | 0.297 | 3.2 | -0.964 | -0.596 | 1.11 | -0.0567 | 17.2 | 19.4 | 228 | 13.2 | 17.2 |
| 61.57 | 0.365 | 11.8 | 0.125 | 3.19 | -0.992 | -0.554 | -- | -0.104 | 17.3 | 19.21 | 213 | 13.3 | 17.2 |
| 56.2 | 0.349 | 11.8 | 0.275 | 3.18 | -0.981 | -- | 1.07 | -0.0755 | 17.2 | 19.33 | 251 | 13.2 | 16.9 |
| 62.19 | 0.367 | 11.8 | 0.1 | 3.19 | -0.964 | -- | -- | -0.105 | 17.2 | 19.3 | 201 | 13.4 | 17.3 |
| 92.46 | 0.448 | 11.7 | 0.165 | -- | -3.04 | -- | 0.0366 | -0.282 | -- | 14.4 | 793 | 13.6 | 16.3 |
| 99.19 | 0.467 | 11.8 | -0.147 | 3.33 | -- | -0.417 | -- | -0.286 | 16.3 | -- | -- | -- | -- |
| 99.67 | 0.468 | 11.8 | -0.151 | 3.33 | -- | -- | -- | -0.288 | 16.3 | -- | -- | -- | -- |
| 88.53 | 0.438 | 11.7 | 0.0315 | -- | -3.14 | -- | -- | -0.16 | -- | 14.41 | 790 | 13.6 | 16.4 |
| 62.44 | 0.368 | 11.8 | -- | 3.19 | -0.948 | -- | -- | -0.112 | 17.2 | 19.4 | 198 | 13.4 | 17.3 |
| 698 | 1.23 | 11.8 | -0.284 | -- | -- | -- | -- | -0.376 | -- | -- | -- | -- | -- |
| 100.28 | 0.468 | 11.8 | -- | 3.33 | -- | -- | -- | -0.271 | 16.3 | -- | -- | -- | -- |
| 86.09 | 0.432 | 11.7 | -- | -- | -3.34 | -- | -- | -0.186 | -- | 14.5 | 787 | 13.6 | 16.4 |
| 700.13 | 1.24 | 11.8 | -- | -- | -- | -- | -- | -0.345 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.02 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 17 |
| 33 | 63.43 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 4 |
| 46 | 64.41 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 6 |
| 52 | 64.66 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 76 | 66.00 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 12 |
| 97 | 66.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 6 |
| 103 | 66.99 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 6 |
| 120 | 67.56 | temperature | 20 | 30 | > th | dose independent | sin | 11 | NA |
| 133 | 67.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 151 | 68.30 | temperature | 20 | 270 | > th | dose independent | sin | 13 | NA |
| 193 | 69.11 | temperature | 20 | 10 | < th | dose dependent | sin | 10 | NA |
| 202 | 69.23 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 13 | 17 |
| 217 | 69.47 | temperature | 20 | 10 | < th | dose dependent | rect. | 20 | 15 |
| 228 | 69.61 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 13 |
| 253 | 69.80 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 6 |
| 254 | 69.83 | temperature | 20 | 10 | < th | dose dependent | rect. | 20 | 8 |
| 258 | 69.85 | temperature | 20 | 10 | < th | dose dependent | rect. | 20 | 10 |
| 289 | 69.99 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 13 |
| 355 | 70.32 | temperature | 20 | 30 | < th | dose independent | sin | 10 | NA |
| 369 | 70.38 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 14 |
| 400 | 70.51 | temperature | 20 | 270 | < th | dose independent | sin | 12 | NA |
| 428 | 70.65 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 463 | 70.77 | temperature | 25 | 720 | < th | dose dependent | sin | 16 | NA |
| 478 | 70.85 | temperature | 20 | 720 | < th | dose independent | sin | 16 | NA |
| 504 | 70.95 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 7 |
| 507 | 70.95 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 16 |
| 535 | 71.03 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 543 | 71.07 | temperature | 20 | 30 | < th | dose independent | rect. | 20 | 14 |
| 574 | 71.17 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 6 |
| 588 | 71.22 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 5 |
| 607 | 71.30 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 14 |