BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0594300 Os06g0594300|AK110986
         (394 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0594300  Conserved hypothetical protein                      577   e-165

>Os06g0594300 Conserved hypothetical protein
          Length = 394

 Score =  577 bits (1488), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 303/394 (76%), Positives = 303/394 (76%)

Query: 1   MDTQLYTEFSFCNTLQISRRQAAWTCPENSGGAGARAHDAGLPASSRSVYTVWSPPWQSD 60
           MDTQLYTEFSFCNTLQISRRQAAWTCPENSGGAGARAHDAGLPASSRSVYTVWSPPWQSD
Sbjct: 1   MDTQLYTEFSFCNTLQISRRQAAWTCPENSGGAGARAHDAGLPASSRSVYTVWSPPWQSD 60

Query: 61  PMTTTRPSGMTETAAAVRXXXXXXXXXXXXXXXEEMAPWRATRCPSRSMYMRSPASGAAL 120
           PMTTTRPSGMTETAAAVR               EEMAPWRATRCPSRSMYMRSPASGAAL
Sbjct: 61  PMTTTRPSGMTETAAAVRASSGTGATGRHAAGAEEMAPWRATRCPSRSMYMRSPASGAAL 120

Query: 121 QVLGHAPSSTKPSWTADQVDVAGSNHSAEPTNRPCAGVGYPPTTRNLPXXXXXXXXXXXX 180
           QVLGHAPSSTKPSWTADQVDVAGSNHSAEPTNRPCAGVGYPPTTRNLP            
Sbjct: 121 QVLGHAPSSTKPSWTADQVDVAGSNHSAEPTNRPCAGVGYPPTTRNLPSTQSPRGSSRSS 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXWXXXXXXXXXXXXXXKNDRRGPGMAAPRRHAPV 240
                                      W              KNDRRGPGMAAPRRHAPV
Sbjct: 181 AMSGSAAHASASGSYASADRRAFFSSSWPPATNTFPPTAAHAKNDRRGPGMAAPRRHAPV 240

Query: 241 RKSYTSTESVGAHVSGSQPPTTTSRFLPSTPPSTAATWQNSGKLPLAPPTSGSGVHLPSA 300
           RKSYTSTESVGAHVSGSQPPTTTSRFLPSTPPSTAATWQNSGKLPLAPPTSGSGVHLPSA
Sbjct: 241 RKSYTSTESVGAHVSGSQPPTTTSRFLPSTPPSTAATWQNSGKLPLAPPTSGSGVHLPSA 300

Query: 301 GSNSTIRYEFPGTPPADDCLXXXXXXXXXXXXXXXXXXXXXXXPSAFLRRLYAGDSTSAF 360
           GSNSTIRYEFPGTPPADDCL                       PSAFLRRLYAGDSTSAF
Sbjct: 301 GSNSTIRYEFPGTPPADDCLSAAGPASASSRRACTSASAGRARPSAFLRRLYAGDSTSAF 360

Query: 361 HWREMRRTAGSWSNPTRMRHSLATSSGNPGISSL 394
           HWREMRRTAGSWSNPTRMRHSLATSSGNPGISSL
Sbjct: 361 HWREMRRTAGSWSNPTRMRHSLATSSGNPGISSL 394



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.125    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,403,860
Number of extensions: 570129
Number of successful extensions: 2324
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2323
Number of HSP's successfully gapped: 2
Length of query: 394
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 291
Effective length of database: 11,657,759
Effective search space: 3392407869
Effective search space used: 3392407869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)