Os06g0594300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0594300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 364.42 | 0.897 | 3.96 | 1.17 | 7.07 | 11.3 | 16.7 | 19.4 | 0.226 | 16 | 0.2318 | 768 | 5.04 | 20.7 |
| 446.41 | 0.984 | 3.85 | 1.91 | 8.17 | 12.4 | 3.6 | -- | 0.592 | 16 | 1.158 | 773 | 6.85 | 19.2 |
| 524.34 | 1.07 | 3.73 | 1.04 | 1.99 | 0.891 | -- | -1.78 | 0.074 | 9.11 | 0.1837 | 788 | 7.13 | 20.4 |
| 471.21 | 1.01 | 3.85 | 1.98 | 7.67 | 11.4 | -- | -- | 0.477 | 16 | 1.237 | 770 | 7.27 | 19.1 |
| 499.76 | 1.04 | 3.69 | 1.4 | -- | 3 | -- | -1.51 | 0.453 | -- | 3.972 | 1237 | 9.15 | 15.6 |
| 541.35 | 1.09 | 3.77 | 0.8 | 0.917 | -- | 3.17 | -- | 0.0905 | 9.89 | -- | -- | -- | -- |
| 564.53 | 1.11 | 3.76 | 0.9 | 1.09 | -- | -- | -- | 0.0824 | 7.91 | -- | -- | -- | -- |
| 482.54 | 1.02 | 3.71 | 1.11 | -- | 3.08 | -- | -- | 0.396 | -- | 3.685 | 1327 | 9.77 | 15.4 |
| 512.77 | 1.05 | 3.76 | -- | 5.62 | 9.33 | -- | -- | 0.343 | 15.7 | 2.507 | 810 | 7.07 | 18.8 |
| 628.92 | 1.17 | 3.79 | 0.912 | -- | -- | -- | -- | 0.0969 | -- | -- | -- | -- | -- |
| 585.9 | 1.13 | 3.78 | -- | 1.09 | -- | -- | -- | -0.0179 | 7.86 | -- | -- | -- | -- |
| 513.36 | 1.06 | 3.72 | -- | -- | 3.03 | -- | -- | 0.349 | -- | 5.423 | 1313 | 10 | 15.4 |
| 650.87 | 1.19 | 3.81 | -- | -- | -- | -- | -- | -0.00431 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 404.01 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 2 | 405.96 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 15 |
| 26 | 411.35 | temperature | 25 | 720 | > th | dose independent | sin | 22 | NA |
| 55 | 416.31 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 16 |
| 68 | 418.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 19 |
| 101 | 420.91 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 16 |
| 104 | 421.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 21 |
| 105 | 421.04 | humidity | 60 | 720 | > th | dose dependent | rect. | 15 | 11 |
| 125 | 421.95 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 21 |
| 133 | 422.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 16 |
| 166 | 423.22 | humidity | 60 | 720 | > th | dose dependent | sin | 16 | NA |
| 288 | 426.58 | temperature | 20 | 720 | > th | dose dependent | sin | 21 | NA |
| 291 | 426.78 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 325 | 427.64 | radiation | 1 | 720 | < th | dose dependent | sin | 18 | NA |
| 363 | 428.48 | radiation | 1 | 720 | < th | dose independent | sin | 19 | NA |
| 370 | 428.64 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 374 | 428.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 21 |
| 429 | 429.63 | humidity | 90 | 720 | < th | dose independent | rect. | 7 | 18 |
| 442 | 429.94 | humidity | 70 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 452 | 430.09 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 7 |
| 453 | 430.09 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 21 |
| 460 | 430.26 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 22 |
| 479 | 430.57 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 497 | 430.83 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 23 |
| 568 | 431.97 | humidity | 70 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 571 | 431.99 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 582 | 432.19 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 14 |
| 621 | 432.72 | humidity | 70 | 720 | > th | dose dependent | no | NA | NA |
| 622 | 432.73 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 22 |
| 654 | 432.99 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 656 | 433.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 674 | 433.27 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 10 |
| 695 | 433.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 707 | 433.65 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 12 |
| 724 | 433.83 | humidity | 70 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 732 | 433.91 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 23 |
| 738 | 433.96 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 14 |
| 740 | 433.96 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 750 | 434.03 | humidity | 60 | 720 | > th | dose dependent | rect. | 13 | 18 |
| 751 | 434.04 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 23 |
| 752 | 434.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 22 |
| 775 | 434.30 | humidity | 80 | 720 | < th | dose independent | sin | 19 | NA |
| 820 | 434.69 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 842 | 434.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 21 |
| 843 | 434.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 22 |
| 932 | 435.52 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 12 |