BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0574400 Os06g0574400|J100029L17
         (666 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0574400  Hypothetical protein                               1271   0.0  

>Os06g0574400 Hypothetical protein
          Length = 666

 Score = 1271 bits (3289), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 631/666 (94%), Positives = 631/666 (94%)

Query: 1   SSIATESYLVLGALAQRLPLLHSVEQLSKQDMGLSGIQVETWSWSHAVPMVDLALSWLCL 60
           SSIATESYLVLGALAQRLPLLHSVEQLSKQDMGLSGIQVETWSWSHAVPMVDLALSWLCL
Sbjct: 1   SSIATESYLVLGALAQRLPLLHSVEQLSKQDMGLSGIQVETWSWSHAVPMVDLALSWLCL 60

Query: 61  NDIPYVCLLISGQSKNILEGSYFALVISSVLGMLDSILERISPDSTHDGKSYCLPWIPDF 120
           NDIPYVCLLISGQSKNILEGSYFALVISSVLGMLDSILERISPDSTHDGKSYCLPWIPDF
Sbjct: 61  NDIPYVCLLISGQSKNILEGSYFALVISSVLGMLDSILERISPDSTHDGKSYCLPWIPDF 120

Query: 121 VPKIGLGVITNGFFNFLDDNAVELEQHTSFHGSSLVQGLFHLRSQGNVDTSLCSISCFQR 180
           VPKIGLGVITNGFFNFLDDNAVELEQHTSFHGSSLVQGLFHLRSQGNVDTSLCSISCFQR
Sbjct: 121 VPKIGLGVITNGFFNFLDDNAVELEQHTSFHGSSLVQGLFHLRSQGNVDTSLCSISCFQR 180

Query: 181 LLQLSCSIDRVIQNATTNCTEHLKESKTGIAGRILEQGICNFWRNNLLDMLTSLLPMISS 240
           LLQLSCSIDRVIQNATTNCTEHLKESKTGIAGRILEQGICNFWRNNLLDMLTSLLPMISS
Sbjct: 181 LLQLSCSIDRVIQNATTNCTEHLKESKTGIAGRILEQGICNFWRNNLLDMLTSLLPMISS 240

Query: 241 QWSILQNIEMXXXXXXXXXXXXXXXXXXXXFWSLNFLLAQLDSHFVLELMKILSTGPEGL 300
           QWSILQNIEM                    FWSLNFLLAQLDSHFVLELMKILSTGPEGL
Sbjct: 241 QWSILQNIEMFGRGGPAPGVGFGWGAYGGGFWSLNFLLAQLDSHFVLELMKILSTGPEGL 300

Query: 301 VTVNKSVNPIVQEGNNVTDSVAITSERISSVLSVSLMAGPGQISTLEKAFDILFHPSVLK 360
           VTVNKSVNPIVQEGNNVTDSVAITSERISSVLSVSLMAGPGQISTLEKAFDILFHPSVLK
Sbjct: 301 VTVNKSVNPIVQEGNNVTDSVAITSERISSVLSVSLMAGPGQISTLEKAFDILFHPSVLK 360

Query: 361 FLKSSVLDSHMKLAKAFEWDITEDEYLHFSSVLNSHFRSRWLVIKKKHSDEFTRNNNGTN 420
           FLKSSVLDSHMKLAKAFEWDITEDEYLHFSSVLNSHFRSRWLVIKKKHSDEFTRNNNGTN
Sbjct: 361 FLKSSVLDSHMKLAKAFEWDITEDEYLHFSSVLNSHFRSRWLVIKKKHSDEFTRNNNGTN 420

Query: 421 VPKIPXXXXXXXXXXXXXXXVNPPCSVLAVEWAHQRLPLPVHWILSAVCCIDDPKANLST 480
           VPKIP               VNPPCSVLAVEWAHQRLPLPVHWILSAVCCIDDPKANLST
Sbjct: 421 VPKIPETLETIQEETELAEAVNPPCSVLAVEWAHQRLPLPVHWILSAVCCIDDPKANLST 480

Query: 481 SYAVDVSKAGLFFLLGLEAISAAPCLHAPLVWKMHALSASIRSSMDLLLEDRSRDIFHAL 540
           SYAVDVSKAGLFFLLGLEAISAAPCLHAPLVWKMHALSASIRSSMDLLLEDRSRDIFHAL
Sbjct: 481 SYAVDVSKAGLFFLLGLEAISAAPCLHAPLVWKMHALSASIRSSMDLLLEDRSRDIFHAL 540

Query: 541 QELYGLHLDRLCQKYDSAHSVKKEGSASVDEEKVTRTEVLRFQEKIHANYTTFVESLIEQ 600
           QELYGLHLDRLCQKYDSAHSVKKEGSASVDEEKVTRTEVLRFQEKIHANYTTFVESLIEQ
Sbjct: 541 QELYGLHLDRLCQKYDSAHSVKKEGSASVDEEKVTRTEVLRFQEKIHANYTTFVESLIEQ 600

Query: 601 FAAVSYGDALFGRQVAIYLHRSVEPTIRLAAWNALSNAYVLELLPPLDKCVGDVQGYLEP 660
           FAAVSYGDALFGRQVAIYLHRSVEPTIRLAAWNALSNAYVLELLPPLDKCVGDVQGYLEP
Sbjct: 601 FAAVSYGDALFGRQVAIYLHRSVEPTIRLAAWNALSNAYVLELLPPLDKCVGDVQGYLEP 660

Query: 661 LEVLSL 666
           LEVLSL
Sbjct: 661 LEVLSL 666



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,594,156
Number of extensions: 793045
Number of successful extensions: 1581
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1580
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 559
Effective length of database: 11,448,903
Effective search space: 6399936777
Effective search space used: 6399936777
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)