BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0573700 Os06g0573700|AK106254
         (484 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0573700  Conserved hypothetical protein                      783   0.0  

>Os06g0573700 Conserved hypothetical protein
          Length = 484

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/484 (82%), Positives = 398/484 (82%)

Query: 1   MEQWLPLFRYLLXXXXXXXXXXXXXXXXXGDDDVHXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MEQWLPLFRYLL                 GDDDVH                         
Sbjct: 1   MEQWLPLFRYLLASPAPNAAAFSSSSSSSGDDDVHCPTAPPPAAALLCLLLSPAPTLPAS 60

Query: 61  XXXXILFQTLPPXXXXXXXXXXXXXXXXXDPALVRSLATRVLSEPSGRYGLWARRGARHL 120
               ILFQTLPP                 DPALVRSLATRVLSEPSGRYGLWARRGARHL
Sbjct: 61  DPPAILFQTLPPLAQSQALSFLASSAGLLDPALVRSLATRVLSEPSGRYGLWARRGARHL 120

Query: 121 LDGLPQGGGIDAPGEFLDGFHEPPQWLKEAAARTRPALPWLPLDRHSVKVGVCSGRYGFD 180
           LDGLPQGGGIDAPGEFLDGFHEPPQWLKEAAARTRPALPWLPLDRHSVKVGVCSGRYGFD
Sbjct: 121 LDGLPQGGGIDAPGEFLDGFHEPPQWLKEAAARTRPALPWLPLDRHSVKVGVCSGRYGFD 180

Query: 181 RVGLDSLVLEKDEDSEMQEAKCVPSPSQPAALGTLSVQRALALQKEILMAESILVAQRVA 240
           RVGLDSLVLEKDEDSEMQEAKCVPSPSQPAALGTLSVQRALALQKEILMAESILVAQRVA
Sbjct: 181 RVGLDSLVLEKDEDSEMQEAKCVPSPSQPAALGTLSVQRALALQKEILMAESILVAQRVA 240

Query: 241 KDLQQLCVESGNAEAVLSIVQPWKADDDTVRVLLSSLVLDGDGMHRKGPALMLCSLFLPK 300
           KDLQQLCVESGNAEAVLSIVQPWKADDDTVRVLLSSLVLDGDGMHRKGPALMLCSLFLPK
Sbjct: 241 KDLQQLCVESGNAEAVLSIVQPWKADDDTVRVLLSSLVLDGDGMHRKGPALMLCSLFLPK 300

Query: 301 LLEIQRPXXXXXXXXXXDLCKRHPXXXXXXXXXXXXXRKEGLNVPQCDVLTRIVKDCMHP 360
           LLEIQRP          DLCKRHP             RKEGLNVPQCDVLTRIVKDCMHP
Sbjct: 301 LLEIQRPVSSVLLSAALDLCKRHPAAALEAILLPLVLRKEGLNVPQCDVLTRIVKDCMHP 360

Query: 361 LHVTAFCHRLLSGDEREWRPVCMPEHRSNISSNLVWTESLFALLYSILNQDICLTSSSTE 420
           LHVTAFCHRLLSGDEREWRPVCMPEHRSNISSNLVWTESLFALLYSILNQDICLTSSSTE
Sbjct: 361 LHVTAFCHRLLSGDEREWRPVCMPEHRSNISSNLVWTESLFALLYSILNQDICLTSSSTE 420

Query: 421 NLVSVIDEMASKLPRSLKFGNFLLCFISKCWRVSKIHSVLLERAAEKTDTFLTKAILAKL 480
           NLVSVIDEMASKLPRSLKFGNFLLCFISKCWRVSKIHSVLLERAAEKTDTFLTKAILAKL
Sbjct: 421 NLVSVIDEMASKLPRSLKFGNFLLCFISKCWRVSKIHSVLLERAAEKTDTFLTKAILAKL 480

Query: 481 RTAN 484
           RTAN
Sbjct: 481 RTAN 484



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,944,251
Number of extensions: 555867
Number of successful extensions: 1174
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1172
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 379
Effective length of database: 11,553,331
Effective search space: 4378712449
Effective search space used: 4378712449
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)