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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0573700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.53 (0.0459) R2 : 0.204
β1 : 0.822 (0.168) R2dD : 0.0412 R2D : 0.041
β2 : 0.676 (0.118) R2dC : 0.0569 R2C : 0.0494
β3 : 1.32 (0.173) R2dE : 0.102 R2E : 0.09
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.194 (0.0983) R2dN8 : 0.00974 R2N8 : 0.0113
σ : 0.859
deviance : 340.29
__
_____
C
peak time of C : 16.4
E
wheather : radiation
threshold : 46.87
memory length : 1140
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
325.48 0.848 4.52 1.04 0.696 1.24 0.505 3.48 -0.167 16.4 46.78 1148 -- --
339.85 0.859 4.52 0.856 0.675 1.29 0.315 -- -0.19 16.4 47.07 1140 -- --
326.03 0.841 4.52 1.05 0.686 1.25 -- 3.54 -0.167 16.4 46.99 1140 -- --
340.29 0.859 4.53 0.822 0.676 1.32 -- -- -0.194 16.4 46.87 1140 -- --
348.62 0.87 4.52 0.991 -- 1.39 -- 3.66 -0.183 -- 46.27 1034 -- --
380 0.914 4.52 0.804 0.7 -- 0.557 -- -0.153 17.7 -- -- -- --
380.75 0.914 4.52 0.801 0.703 -- -- -- -0.151 17.6 -- -- -- --
363.14 0.888 4.52 0.771 -- 1.34 -- -- -0.238 -- 44.99 1066 -- --
357.28 0.88 4.53 -- 0.631 1.31 -- -- -0.249 16.4 46.73 1140 -- --
406.44 0.942 4.51 0.778 -- -- -- -- -0.168 -- -- -- -- --
397.66 0.933 4.54 -- 0.69 -- -- -- -0.24 17.7 -- -- -- --
377.5 0.905 4.56 -- -- 1.23 -- -- -0.378 -- 40 1091 -- --
422.41 0.959 4.53 -- -- -- -- -- -0.254 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 334.17 radiation 10 14400 < th dose dependent rect. 20 7
2 334.90 radiation 40 1440 > th dose dependent rect. 13 23
3 335.47 radiation 40 1440 > th dose dependent rect. 13 21
5 336.13 radiation 40 1440 > th dose dependent rect. 9 1
6 336.40 atmosphere 1000 1440 > th dose independent rect. 8 1
8 336.89 humidity 60 720 < th dose dependent rect. 18 1
9 336.90 humidity 60 720 < th dose independent rect. 18 1
36 337.37 atmosphere 1000 1440 > th dose independent rect. 3 8
38 337.58 temperature 30 720 > th dose dependent rect. 18 1
54 337.70 radiation 40 1440 > th dose dependent rect. 9 3
93 337.91 atmosphere 1000 1440 < th dose dependent rect. 4 8
97 338.06 atmosphere 1000 1440 < th dose dependent rect. 8 3
102 338.16 wind 7 14400 < th dose independent rect. 12 1
104 338.18 atmosphere 1000 1440 < th dose independent rect. 8 1
114 338.31 atmosphere 1000 1440 < th dose independent rect. 3 8
115 338.38 atmosphere 1000 1440 < th dose independent rect. 4 6
120 338.42 temperature 10 270 > th dose dependent rect. 19 14
122 338.45 atmosphere 1000 10 > th dose independent rect. 16 14
123 338.47 radiation 40 1440 > th dose dependent rect. 13 1
146 338.98 wind 7 14400 > th dose independent rect. 12 1
147 338.98 wind 5 14400 > th dose dependent rect. 12 1
151 339.05 temperature 30 720 > th dose independent rect. 18 1
180 339.18 radiation 40 1440 > th dose dependent sin 11 NA
196 339.50 radiation 40 1440 > th dose dependent rect. 11 1
252 340.10 temperature 25 90 < th dose independent rect. 2 9
302 340.72 temperature 25 270 < th dose independent rect. 24 10
387 342.53 humidity 60 720 < th dose independent rect. 17 16
399 342.85 wind 7 14400 < th dose independent rect. 5 8
422 343.10 temperature 25 90 < th dose independent rect. 2 7
426 343.20 temperature 25 90 < th dose independent rect. 2 5
431 343.28 radiation 40 720 < th dose independent rect. 13 18
433 343.36 humidity 70 30 > th dose independent rect. 19 7
434 343.37 humidity 60 1440 < th dose dependent rect. 17 16
475 344.21 humidity 50 1440 > th dose independent rect. 17 17
498 344.45 humidity 50 1440 < th dose independent rect. 16 19
509 344.62 humidity 50 1440 > th dose independent rect. 16 1
524 344.66 radiation 40 1440 > th dose dependent rect. 9 6
544 344.70 humidity 50 1440 > th dose independent rect. 17 9
567 344.75 radiation 40 1440 > th dose dependent no NA NA
752 344.90 humidity 50 1440 < th dose dependent rect. 16 19
806 345.03 atmosphere 1000 10 > th dose independent rect. 2 4
814 345.12 temperature 25 90 < th dose independent sin 6 NA
820 345.18 temperature 10 270 > th dose dependent rect. 19 5
871 345.55 temperature 20 90 > th dose independent rect. 6 20
877 345.60 radiation 40 1440 > th dose dependent rect. 11 23
894 345.62 temperature 10 10 > th dose dependent rect. 6 10
916 345.75 radiation 1 1440 < th dose dependent rect. 20 7
939 345.79 temperature 10 1440 > th dose independent rect. 20 7
942 345.79 temperature 30 1440 < th dose independent rect. 20 7
946 345.79 humidity 50 1440 > th dose independent rect. 20 7
952 345.79 atmosphere 995 1440 > th dose independent rect. 20 7
953 345.79 radiation 1 1440 < th dose independent rect. 20 7
973 345.79 temperature 10 1440 > th dose independent rect. 3 17
998 345.92 wind 7 270 < th dose independent rect. 15 14