BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0563900 Os06g0563900|J100031F15
         (52 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0563900  Conserved hypothetical protein                      108   8e-25
Os05g0196800  Similar to Diacylglycerol acylCoA acyltransferase    83   3e-17

>Os06g0563900 Conserved hypothetical protein
          Length = 52

 Score =  108 bits (270), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 52/52 (100%), Positives = 52/52 (100%)

Query: 1  MSFIFQYINPIVKNSKHPLKGNFLNAIERVLKLSVPTLYVWLCMFYCFFHLW 52
          MSFIFQYINPIVKNSKHPLKGNFLNAIERVLKLSVPTLYVWLCMFYCFFHLW
Sbjct: 1  MSFIFQYINPIVKNSKHPLKGNFLNAIERVLKLSVPTLYVWLCMFYCFFHLW 52



>Os05g0196800 Similar to Diacylglycerol acylCoA acyltransferase
          Length = 538

 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 42/49 (85%)

Query: 4   IFQYINPIVKNSKHPLKGNFLNAIERVLKLSVPTLYVWLCMFYCFFHLW 52
           I QYINPIV NS+HPLKG  LNA+E VLKLS+P +Y+WLCMFY FFHLW
Sbjct: 346 IEQYINPIVVNSQHPLKGGLLNAVETVLKLSLPNVYLWLCMFYAFFHLW 394



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.336    0.147    0.521 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,637,335
Number of extensions: 42251
Number of successful extensions: 275
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 2
Length of query: 52
Length of database: 17,035,801
Length adjustment: 25
Effective length of query: 27
Effective length of database: 15,730,451
Effective search space: 424722177
Effective search space used: 424722177
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 149 (62.0 bits)