Os06g0563900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0563900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.26 | 0.271 | 10.3 | -0.091 | 0.423 | -0.834 | -1.02 | -0.333 | 0.141 | 16.5 | 24.76 | 648 | -- | -- |
| 33.38 | 0.269 | 10.3 | -0.142 | 0.402 | -0.803 | -0.986 | -- | 0.126 | 16.4 | 25.15 | 610 | -- | -- |
| 34.49 | 0.274 | 10.3 | -0.19 | 0.345 | -0.726 | -- | 0.664 | 0.0926 | 18.4 | 26.63 | 116 | -- | -- |
| 35.03 | 0.276 | 10.3 | -0.151 | 0.291 | -0.803 | -- | -- | 0.114 | 18.8 | 26.7 | 141 | -- | -- |
| 38.37 | 0.289 | 10.3 | -0.382 | -- | -1.09 | -- | 1.43 | 0.0743 | -- | 41.84 | 253 | -- | -- |
| 43.07 | 0.308 | 10.3 | 0.0667 | 0.465 | -- | -0.96 | -- | 0.292 | 17.2 | -- | -- | -- | -- |
| 45.26 | 0.315 | 10.3 | 0.0655 | 0.463 | -- | -- | -- | 0.287 | 17.5 | -- | -- | -- | -- |
| 38.92 | 0.291 | 10.3 | -0.207 | -- | -1 | -- | -- | 0.0635 | -- | 27.95 | 284 | -- | -- |
| 35.36 | 0.277 | 10.3 | -- | 0.341 | -0.787 | -- | -- | 0.133 | 18.9 | 26.62 | 123 | -- | -- |
| 56.41 | 0.351 | 10.3 | 0.0504 | -- | -- | -- | -- | 0.276 | -- | -- | -- | -- | -- |
| 45.38 | 0.315 | 10.3 | -- | 0.462 | -- | -- | -- | 0.28 | 17.5 | -- | -- | -- | -- |
| 39.84 | 0.294 | 10.3 | -- | -- | -0.923 | -- | -- | 0.103 | -- | 28.2 | 291 | -- | -- |
| 56.48 | 0.351 | 10.3 | -- | -- | -- | -- | -- | 0.27 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.71 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 4 | 32.04 | temperature | 30 | 10 | < th | dose dependent | sin | 4 | NA |
| 27 | 32.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 13 |
| 39 | 32.75 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 42 | 32.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 44 | 32.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 22 |
| 150 | 33.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 19 |
| 152 | 33.20 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 161 | 33.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 184 | 33.27 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 192 | 33.29 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 196 | 33.29 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 232 | 33.37 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 243 | 33.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 22 |
| 245 | 33.39 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 260 | 33.44 | temperature | 10 | 90 | > th | dose dependent | sin | 5 | NA |
| 308 | 33.55 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 374 | 33.66 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 393 | 33.70 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 461 | 33.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 14 |
| 491 | 33.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 494 | 33.84 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 517 | 33.87 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 529 | 33.89 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 567 | 33.94 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 581 | 33.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 592 | 33.98 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 599 | 33.98 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 645 | 34.05 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 684 | 34.09 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 777 | 34.17 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 7 |
| 785 | 34.18 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 848 | 34.21 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 8 |
| 859 | 34.22 | radiation | 40 | 4320 | < th | dose dependent | rect. | 3 | 3 |
| 865 | 34.22 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 866 | 34.22 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 11 |
| 867 | 34.22 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 11 |
| 897 | 34.23 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |