BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0557200 Os06g0557200|AK063039
         (174 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0557200  Conserved hypothetical protein                      280   5e-76

>Os06g0557200 Conserved hypothetical protein
          Length = 174

 Score =  280 bits (715), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 148/174 (85%), Positives = 148/174 (85%)

Query: 1   MYSLYSASAHRDCPLNNVHHEXXXXXXXXXXXXXXXXXXXXXXXXXXQQRSGAVDIVQLA 60
           MYSLYSASAHRDCPLNNVHHE                          QQRSGAVDIVQLA
Sbjct: 1   MYSLYSASAHRDCPLNNVHHEIAAVIVVVVVPPARLRAPPPAPLLRLQQRSGAVDIVQLA 60

Query: 61  RLGSLGRHPVAPDEVVQDLLHGRPRRRVLPRADHAEREHRHDVRQTGLLPDVGVDDVIER 120
           RLGSLGRHPVAPDEVVQDLLHGRPRRRVLPRADHAEREHRHDVRQTGLLPDVGVDDVIER
Sbjct: 61  RLGSLGRHPVAPDEVVQDLLHGRPRRRVLPRADHAEREHRHDVRQTGLLPDVGVDDVIER 120

Query: 121 RAFLVPPPRPLGQAEVGCGVVRDLAGRQLQQHDAEAVDVHLLIHPLAVPILCKM 174
           RAFLVPPPRPLGQAEVGCGVVRDLAGRQLQQHDAEAVDVHLLIHPLAVPILCKM
Sbjct: 121 RAFLVPPPRPLGQAEVGCGVVRDLAGRQLQQHDAEAVDVHLLIHPLAVPILCKM 174



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,932,586
Number of extensions: 246851
Number of successful extensions: 539
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 538
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 80
Effective length of database: 12,127,685
Effective search space: 970214800
Effective search space used: 970214800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 152 (63.2 bits)