BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0542300 Os06g0542300|J100050D16
         (183 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0542300  Heavy metal transport/detoxification protein d...   202   9e-53
Os01g0758000  Heavy metal transport/detoxification protein d...    77   5e-15

>Os06g0542300 Heavy metal transport/detoxification protein domain containing
           protein
          Length = 183

 Score =  202 bits (515), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 121/183 (66%), Positives = 121/183 (66%)

Query: 1   MTIVEMQMNIDCDGCEDNVRKALQRLQXXXXXXXXXXXXXXTVTGSASQKKVLRAARRSG 60
           MTIVEMQMNIDCDGCEDNVRKALQRLQ              TVTGSASQKKVLRAARRSG
Sbjct: 1   MTIVEMQMNIDCDGCEDNVRKALQRLQGVDYVDVDRVRGKVTVTGSASQKKVLRAARRSG 60

Query: 61  RIAVLWPSAYDTDXXXXXXXXXXXXXXXXXXXXXXTIKPXXXXXXXXXXXXXXPXXXXXX 120
           RIAVLWPSAYDTD                      TIKP              P      
Sbjct: 61  RIAVLWPSAYDTDHRHHHQAYYAQPAYHHHHHYQQTIKPAAAAAAAVAVAARAPHHHHQH 120

Query: 121 XXXXXXGRMSGGGKAVSSYNYHVHGYFDSDLHGYSGGHHHGDVVPAAARSYFSDENPHAC 180
                 GRMSGGGKAVSSYNYHVHGYFDSDLHGYSGGHHHGDVVPAAARSYFSDENPHAC
Sbjct: 121 YSSVQHGRMSGGGKAVSSYNYHVHGYFDSDLHGYSGGHHHGDVVPAAARSYFSDENPHAC 180

Query: 181 AVM 183
           AVM
Sbjct: 181 AVM 183



>Os01g0758000 Heavy metal transport/detoxification protein domain containing
          protein
          Length = 158

 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 45/70 (64%)

Query: 1  MTIVEMQMNIDCDGCEDNVRKALQRLQXXXXXXXXXXXXXXTVTGSASQKKVLRAARRSG 60
          MTIVEM +++DC GCE  +RKA+QR++              TV G+  QKKVL+A RR+G
Sbjct: 1  MTIVEMSVHMDCAGCEKKIRKAIQRMEGVDDVEIDMERQKVTVNGNVEQKKVLKAVRRTG 60

Query: 61 RIAVLWPSAY 70
          R AVLWP  Y
Sbjct: 61 RRAVLWPHPY 70



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.132    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,624,002
Number of extensions: 143025
Number of successful extensions: 461
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 2
Length of query: 183
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 88
Effective length of database: 12,075,471
Effective search space: 1062641448
Effective search space used: 1062641448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)