FiT-DB / Search/ Help/ Sample detail

Os06g0542300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heavy metal transport/detoxification protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.54 (0.0659) R2 : 0.827
β1 : 6.07 (0.253) R2dD : 0.397 R2D : 0.247
β2 : 2.74 (0.126) R2dC : 0.179 R2C : 0.053
β3 : -5.92 (0.559) R2dE : 0.249 R2E : 0.261
β4 : 2.67 (0.495) R2dD*C : 0.0112 R2D*C : -0.112
β5 : -11.6 (1.41) R2dD*E : 0.162 R2D*E : -0.586
γ1 : 2.41 (0.127) R2dN8 : 0.239 R2N8 : 0.118
σ : 0.983
deviance : 438.12
__
_____
C
peak time of C : 22
E
wheather : temperature
threshold : 21.64
memory length : 5757
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
438.12 0.983 6.54 6.07 2.74 -5.92 2.67 -11.6 2.41 22 21.64 5757 -- --
488.45 1.03 6.83 6.04 2.61 -1.96 3.01 -- 2.43 22.3 32.16 1908 -- --
465.94 1.01 6.55 5.93 2.72 -5.86 -- -11.3 2.4 22.2 21.74 5896 -- --
512.43 1.05 6.85 5.92 2.63 -1.78 -- -- 2.41 22 61.8 2673 -- --
897.53 1.4 6.5 6.17 -- -5.42 -- -10.6 2.4 -- 22.1 5195 -- --
546.75 1.1 6.76 6.73 2.76 -- 2.74 -- 2.78 22.1 -- -- -- --
576.08 1.12 6.76 6.62 2.74 -- -- -- 2.78 22.2 -- -- -- --
802.15 1.32 6.82 5.68 -- -3.81 -- -- 2.2 -- 68.16 769 -- --
609.89 1.15 7.29 -- 2.66 -5.39 -- -- 0.427 22.1 128.8 47520 -- --
1030.96 1.5 6.69 6.66 -- -- -- -- 2.78 -- -- -- -- --
1732.76 1.95 6.93 -- 2.77 -- -- -- 2.04 22.4 -- -- -- --
1036.03 1.5 7.23 -- -- -5.49 -- -- 0.397 -- 88.25 47520 -- --
2202.52 2.19 6.86 -- -- -- -- -- 2.04 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 396.07 humidity 60 43200 > th dose independent rect. 1 9
8 398.71 humidity 60 43200 < th dose independent rect. 23 11
31 402.64 humidity 60 43200 < th dose independent rect. 9 1
36 404.07 humidity 70 43200 < th dose dependent rect. 3 6
58 407.70 humidity 60 43200 < th dose dependent rect. 23 13
65 407.86 humidity 60 43200 < th dose dependent rect. 9 3
76 409.06 wind 1 43200 < th dose independent rect. 22 1
96 410.69 wind 1 43200 > th dose independent rect. 22 1
121 411.71 radiation 10 43200 < th dose dependent rect. 17 11
122 411.72 radiation 10 43200 > th dose independent rect. 16 2
136 411.74 radiation 10 43200 < th dose dependent rect. 17 3
154 412.52 humidity 60 43200 < th dose dependent sin 7 NA
190 413.17 humidity 80 43200 < th dose independent rect. 17 4
233 415.77 humidity 80 43200 < th dose independent rect. 19 1
274 416.75 humidity 80 43200 < th dose independent rect. 16 6
276 416.85 wind 1 43200 < th dose independent rect. 22 5
296 417.65 humidity 90 14400 < th dose independent rect. 24 1
308 417.89 humidity 80 43200 > th dose independent rect. 19 1
369 419.40 wind 1 43200 < th dose dependent rect. 22 2
382 419.53 humidity 80 43200 > th dose independent rect. 17 4
385 419.56 wind 1 14400 < th dose dependent rect. 1 3
421 421.07 humidity 70 43200 > th dose dependent rect. 18 2
426 421.47 radiation 10 43200 > th dose dependent rect. 16 1
442 421.83 wind 1 43200 < th dose dependent rect. 22 5
481 422.62 wind 1 14400 < th dose independent rect. 8 1
483 422.63 humidity 80 14400 > th dose dependent rect. 4 2
517 422.95 wind 1 14400 < th dose dependent rect. 22 12
539 423.23 humidity 50 43200 > th dose independent rect. 14 2
550 423.83 wind 1 43200 < th dose dependent rect. 17 14
552 423.86 atmosphere 1010 43200 > th dose dependent rect. 23 1
579 424.55 wind 1 14400 < th dose dependent rect. 22 8
581 424.56 wind 1 43200 > th dose independent rect. 18 12
582 424.59 radiation 10 43200 < th dose dependent sin 14 NA
592 424.72 atmosphere 1010 43200 > th dose dependent rect. 21 7
594 424.74 humidity 50 43200 > th dose independent rect. 9 8
612 424.90 humidity 90 14400 < th dose independent rect. 24 6
614 424.91 atmosphere 1010 43200 > th dose dependent rect. 3 1
639 425.26 radiation 1 43200 < th dose dependent rect. 19 10
669 425.41 humidity 50 43200 > th dose independent rect. 2 15
698 425.54 atmosphere 1010 43200 > th dose dependent rect. 18 1
700 425.56 wind 1 43200 < th dose dependent sin 12 NA
701 425.56 radiation 1 43200 < th dose dependent rect. 22 7
705 425.58 wind 1 14400 < th dose dependent rect. 20 14
714 425.64 atmosphere 1010 43200 > th dose independent rect. 18 1
719 425.67 atmosphere 1010 43200 > th dose dependent sin 12 NA
737 425.78 humidity 50 43200 > th dose independent rect. 19 22
754 425.84 wind 1 43200 < th dose independent rect. 18 12
809 426.07 wind 1 43200 < th dose independent rect. 20 10
861 426.25 humidity 50 43200 > th dose independent sin 0 NA
869 426.27 wind 1 43200 > th dose independent rect. 20 10
897 426.31 atmosphere 1010 43200 > th dose dependent rect. 5 1
931 426.43 humidity 50 43200 > th dose independent rect. 9 22
961 426.50 wind 1 14400 < th dose dependent sin 8 NA