BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0529800 Os06g0529800|AK071835
         (420 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0529800  Zinc finger, N-recognin domain containing protein   766   0.0  

>Os06g0529800 Zinc finger, N-recognin domain containing protein
          Length = 420

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/400 (93%), Positives = 373/400 (93%)

Query: 21  PTVTXXXXXXXXXXXXXXXDLVLGGDDGKECTYGGGYLKRQAVFSCLTCVPAGVAGVCTA 80
           PTVT               DLVLGGDDGKECTYGGGYLKRQAVFSCLTCVPAGVAGVCTA
Sbjct: 21  PTVTIGEYIEGIEAEELEADLVLGGDDGKECTYGGGYLKRQAVFSCLTCVPAGVAGVCTA 80

Query: 81  CSLACHDGHEVVELWTKRKFRCDCGNSKFGSHVCKLCPEKDPENPVNSYNHNFKGSYCTC 140
           CSLACHDGHEVVELWTKRKFRCDCGNSKFGSHVCKLCPEKDPENPVNSYNHNFKGSYCTC
Sbjct: 81  CSLACHDGHEVVELWTKRKFRCDCGNSKFGSHVCKLCPEKDPENPVNSYNHNFKGSYCTC 140

Query: 141 GRPYPDPEAEKQVEMIQCCICEDWFHEDHIGLNSIEEIPRDEEGEPLYEDFICPKCSPKC 200
           GRPYPDPEAEKQVEMIQCCICEDWFHEDHIGLNSIEEIPRDEEGEPLYEDFICPKCSPKC
Sbjct: 141 GRPYPDPEAEKQVEMIQCCICEDWFHEDHIGLNSIEEIPRDEEGEPLYEDFICPKCSPKC 200

Query: 201 YFLKLYPDTIWASNKQSSAPQAETTNSTVMNGNSSLGDIEKSENGALINHLNCEKTSDNE 260
           YFLKLYPDTIWASNKQSSAPQAETTNSTVMNGNSSLGDIEKSENGALINHLNCEKTSDNE
Sbjct: 201 YFLKLYPDTIWASNKQSSAPQAETTNSTVMNGNSSLGDIEKSENGALINHLNCEKTSDNE 260

Query: 261 NCPKDSVAPEKASLDDSSDGKCKLGMNICSNTPSADSEKKMPFFMSKSWREVICRCETCT 320
           NCPKDSVAPEKASLDDSSDGKCKLGMNICSNTPSADSEKKMPFFMSKSWREVICRCETCT
Sbjct: 261 NCPKDSVAPEKASLDDSSDGKCKLGMNICSNTPSADSEKKMPFFMSKSWREVICRCETCT 320

Query: 321 DFYAQQGVAYLIDKEDSIEEYEKVAXXXXXXXXXXXXGVEANFLNSLDHVQKIEILSGIN 380
           DFYAQQGVAYLIDKEDSIEEYEKVA            GVEANFLNSLDHVQKIEILSGIN
Sbjct: 321 DFYAQQGVAYLIDKEDSIEEYEKVAKQKREKKLEQQEGVEANFLNSLDHVQKIEILSGIN 380

Query: 381 DMKNELQSFLETFDSSKPVTSEDIRAVFENLAKKKKQRLS 420
           DMKNELQSFLETFDSSKPVTSEDIRAVFENLAKKKKQRLS
Sbjct: 381 DMKNELQSFLETFDSSKPVTSEDIRAVFENLAKKKKQRLS 420



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.133    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,415,960
Number of extensions: 651213
Number of successful extensions: 1551
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1551
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 317
Effective length of database: 11,657,759
Effective search space: 3695509603
Effective search space used: 3695509603
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)