Os06g0529800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, N-recognin domain containing protein.
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Os06g0529800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, N-recognin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.41 | 0.196 | 12.2 | -0.00263 | 0.178 | -0.988 | -0.347 | -1.06 | 0.169 | 20.1 | 1.049 | 1427 | -- | -- |
| 17.75 | 0.196 | 12.2 | -0.0909 | 0.179 | -0.768 | -0.328 | -- | 0.148 | 20 | 2.032 | 1418 | -- | -- |
| 17.77 | 0.196 | 12.2 | -0.00291 | 0.177 | -0.969 | -- | -0.976 | 0.169 | 19.9 | 1.08 | 1424 | -- | -- |
| 18.06 | 0.198 | 12.2 | -0.0858 | 0.169 | -0.766 | -- | -- | 0.148 | 19.7 | 1.99 | 1414 | -- | -- |
| 18.86 | 0.202 | 12.2 | -0.00381 | -- | -0.964 | -- | -0.875 | 0.171 | -- | 1.08 | 1390 | -- | -- |
| 25.29 | 0.236 | 12.2 | 0.0728 | 0.195 | -- | -0.265 | -- | 0.256 | 20.5 | -- | -- | -- | -- |
| 25.51 | 0.237 | 12.2 | 0.0809 | 0.195 | -- | -- | -- | 0.256 | 20.6 | -- | -- | -- | -- |
| 18.85 | 0.202 | 12.2 | -0.0873 | -- | -0.814 | -- | -- | 0.153 | -- | 1.96 | 1358 | -- | -- |
| 18.23 | 0.199 | 12.2 | -- | 0.168 | -0.739 | -- | -- | 0.149 | 19.6 | 2.16 | 1412 | -- | -- |
| 27.66 | 0.246 | 12.2 | 0.0804 | -- | -- | -- | -- | 0.254 | -- | -- | -- | -- | -- |
| 25.68 | 0.237 | 12.2 | -- | 0.195 | -- | -- | -- | 0.247 | 20.7 | -- | -- | -- | -- |
| 19.02 | 0.203 | 12.2 | -- | -- | -0.781 | -- | -- | 0.166 | -- | 2.032 | 1351 | -- | -- |
| 27.83 | 0.246 | 12.2 | -- | -- | -- | -- | -- | 0.245 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 3 | 17.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 6 | 17.18 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 11 | 17.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 12 | 17.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 19 | 17.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 5 |
| 21 | 17.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 11 |
| 47 | 17.25 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 82 | 17.27 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 110 | 17.30 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 112 | 17.31 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 125 | 17.35 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 126 | 17.35 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 14 |
| 152 | 17.47 | radiation | 1 | 1440 | > th | dose independent | sin | 20 | NA |
| 155 | 17.48 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 178 | 17.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 179 | 17.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 185 | 17.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 193 | 17.52 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 211 | 17.52 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 244 | 17.53 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 9 |
| 289 | 17.54 | radiation | 1 | 1440 | < th | dose independent | sin | 21 | NA |
| 310 | 17.55 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 313 | 17.55 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 11 |
| 379 | 17.61 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 386 | 17.61 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 526 | 17.84 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 531 | 17.84 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 20 |
| 539 | 17.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 541 | 17.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 21 |
| 548 | 17.86 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 549 | 17.86 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 596 | 17.87 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 818 | 18.27 | humidity | 90 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 831 | 18.31 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 836 | 18.34 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 879 | 18.44 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 906 | 18.49 | wind | 9 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 908 | 18.49 | humidity | 90 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 920 | 18.52 | humidity | 90 | 720 | > th | dose dependent | rect. | 13 | 11 |
| 924 | 18.53 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 12 |
| 954 | 18.63 | humidity | 90 | 720 | > th | dose dependent | sin | 21 | NA |