BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0522600 Os06g0522600|Os06g0522600
         (185 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0522600                                                      152   2e-37
Os04g0649800                                                       86   2e-17

>Os06g0522600 
          Length = 185

 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/185 (49%), Positives = 92/185 (49%)

Query: 1   MAERGSRAVAGCGRSGRRASPAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLHGAAV 60
           MAERGSRAVAGCGRSGRRASPAV                              RLHGAAV
Sbjct: 1   MAERGSRAVAGCGRSGRRASPAVERRQRRLRAEQPRAVAAVVVGSPSSSSPWARLHGAAV 60

Query: 61  RRHRPGVAVAVHRWLEVPADDAPQXXXXXXXXXXXXXXXXXXXXXIPWXXXXXXXXXXXX 120
           RRHRPGVAVAVHRWLEVPADDAPQ                     IPW            
Sbjct: 61  RRHRPGVAVAVHRWLEVPADDAPQSLTLLLCRGCGSGGGGSVAGLIPWSSRMPSSRSCSR 120

Query: 121 XXXTLGVPSASWXXXXXXXXXXXXXXXXXXXXXXXXXXXIFRVQTAACTCVFVRAYICMH 180
              TLGVPSASW                           IFRVQTAACTCVFVRAYICMH
Sbjct: 121 SVSTLGVPSASWTVVGAGAVTLVVFVDVAVALDVVAHTHIFRVQTAACTCVFVRAYICMH 180

Query: 181 GDDQL 185
           GDDQL
Sbjct: 181 GDDQL 185



>Os04g0649800 
          Length = 364

 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/130 (43%), Positives = 60/130 (46%), Gaps = 3/130 (2%)

Query: 3   ERGSRAVAGCGRSGRRASPAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLHGAAVRR 62
           ERGS AVAGCGRSGR+ASPA                               RLHGAA+RR
Sbjct: 70  ERGSGAVAGCGRSGRQASPA---AERRLWAEQPRAVAVVVVGSPPSSSPWARLHGAAIRR 126

Query: 63  HRPGVAVAVHRWLEVPADDAPQXXXXXXXXXXXXXXXXXXXXXIPWXXXXXXXXXXXXXX 122
           HRPGVAVAVHRW+EVPADDAPQ                     IPW              
Sbjct: 127 HRPGVAVAVHRWVEVPADDAPQSLALLLCRGSDSGGGGSVAGLIPWSSRTLSSRSCSRSM 186

Query: 123 XTLGVPSASW 132
            TL V SASW
Sbjct: 187 STLSVSSASW 196



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.136    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,577,195
Number of extensions: 58718
Number of successful extensions: 205
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 2
Length of query: 185
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 90
Effective length of database: 12,075,471
Effective search space: 1086792390
Effective search space used: 1086792390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 153 (63.5 bits)