Os06g0522600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os06g0522600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 340.1 | 0.866 | 3.12 | 0.162 | 0.0391 | 7.19 | 1.07 | -25 | -0.127 | 15.2 | 3.039 | 120 | 12.9 | 1.86 |
| 372.09 | 0.905 | 3.08 | 0.26 | 0.248 | 0.557 | -0.12 | -- | -0.155 | 19.9 | 4.825 | 101 | 12 | 3.14 |
| 341.88 | 0.861 | 3.13 | 0.167 | 0.201 | 7.25 | -- | -24.3 | -0.14 | 19.3 | 2.919 | 121 | 12.9 | 1.92 |
| 364.37 | 0.889 | 3.08 | 0.274 | 0.183 | 1.37 | -- | -- | -0.146 | 20.1 | 4.86 | 107 | 12.2 | 3.57 |
| 343.62 | 0.863 | 3.12 | 0.175 | -- | 7.44 | -- | -24.7 | -0.129 | -- | 2.959 | 120 | 12.9 | 1.85 |
| 373.93 | 0.907 | 3.08 | 0.31 | 0.247 | -- | 0.18 | -- | -0.171 | 18 | -- | -- | -- | -- |
| 373.98 | 0.906 | 3.08 | 0.308 | 0.249 | -- | -- | -- | -0.171 | 18.4 | -- | -- | -- | -- |
| 366.11 | 0.891 | 3.07 | 0.259 | -- | 1.4 | -- | -- | -0.147 | -- | 4.9 | 107 | 12.2 | 3.63 |
| 365.12 | 0.89 | 3.07 | -- | 0.218 | 1.51 | -- | -- | -0.132 | 21.9 | 5.064 | 110 | 11.6 | 4.25 |
| 377.19 | 0.907 | 3.08 | 0.302 | -- | -- | -- | -- | -0.176 | -- | -- | -- | -- | -- |
| 376.48 | 0.908 | 3.09 | -- | 0.244 | -- | -- | -- | -0.205 | 18.4 | -- | -- | -- | -- |
| 367.75 | 0.893 | 3.07 | -- | -- | 1.38 | -- | -- | -0.167 | -- | 4.825 | 107 | 12.2 | 5 |
| 379.59 | 0.909 | 3.08 | -- | -- | -- | -- | -- | -0.209 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 346.18 | wind | 3 | 90 | < th | dose independent | rect. | 13 | 2 |
| 2 | 346.78 | wind | 3 | 90 | < th | dose dependent | rect. | 13 | 2 |
| 3 | 348.60 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 11 | 2 |
| 15 | 352.68 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 24 | 352.84 | wind | 3 | 10 | < th | dose independent | rect. | 12 | 4 |
| 27 | 352.87 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 10 | 4 |
| 29 | 352.91 | wind | 5 | 10 | < th | dose dependent | rect. | 13 | 3 |
| 31 | 353.03 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 11 | 2 |
| 43 | 353.72 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 10 | 6 |
| 85 | 354.69 | wind | 3 | 90 | < th | dose independent | rect. | 12 | 5 |
| 133 | 355.55 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 12 | 4 |
| 155 | 356.12 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 4 | 7 |
| 159 | 356.15 | temperature | 15 | 30 | > th | dose independent | rect. | 3 | 23 |
| 163 | 356.21 | atmosphere | 1005 | 10 | < th | dose dependent | sin | 23 | NA |
| 165 | 356.24 | wind | 3 | 90 | < th | dose independent | rect. | 12 | 7 |
| 181 | 356.44 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 4 | 14 |
| 182 | 356.45 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 12 | 2 |
| 204 | 356.67 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 5 | 4 |
| 225 | 356.76 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 5 | 14 |
| 234 | 356.87 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 2 |
| 244 | 356.95 | atmosphere | 1010 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 246 | 356.95 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 5 | 16 |
| 257 | 357.04 | atmosphere | 1010 | 720 | < th | dose dependent | rect. | 4 | 3 |
| 285 | 357.23 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 4 | 17 |
| 300 | 357.33 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 4 | 14 |
| 320 | 357.48 | temperature | 25 | 90 | < th | dose independent | rect. | 20 | 1 |
| 381 | 357.86 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 7 | 1 |
| 382 | 357.86 | temperature | 15 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 405 | 357.98 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 4 | 6 |
| 406 | 357.99 | humidity | 60 | 10 | < th | dose independent | rect. | 14 | 1 |
| 432 | 358.16 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 4 | 8 |
| 461 | 358.29 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 6 | 6 |
| 677 | 358.96 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 689 | 359.00 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 712 | 359.06 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 7 | 4 |
| 734 | 359.11 | humidity | 90 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 737 | 359.12 | atmosphere | 1005 | 270 | > th | dose independent | sin | 0 | NA |
| 767 | 359.21 | wind | 7 | 30 | < th | dose dependent | rect. | 22 | 18 |
| 779 | 359.25 | temperature | 25 | 90 | < th | dose dependent | rect. | 16 | 6 |
| 819 | 359.36 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 2 | 14 |
| 835 | 359.40 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 5 | 14 |
| 886 | 359.58 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 20 | 2 |
| 897 | 359.61 | atmosphere | 1005 | 270 | < th | dose independent | sin | 0 | NA |
| 933 | 359.69 | atmosphere | 995 | 10 | > th | dose dependent | sin | 23 | NA |
| 986 | 359.84 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 5 | 16 |