BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0510200 Os06g0510200|AK111004
         (234 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0510200  Conserved hypothetical protein                      146   1e-35

>Os06g0510200 Conserved hypothetical protein
          Length = 234

 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/98 (79%), Positives = 78/98 (79%)

Query: 137 AALRVGLMATWMKTALRIPSHAPSRFPRSTRSAHATMSLLGSPPPMCGNNGGCXXXXXXX 196
           AALRVGLMATWMKTALRIPSHAPSRFPRSTRSAHATMSLLGSPPPMCGNNGGC       
Sbjct: 137 AALRVGLMATWMKTALRIPSHAPSRFPRSTRSAHATMSLLGSPPPMCGNNGGCSESEAEA 196

Query: 197 XXXXXXXXXXXXXVGLSLRAGDEPSTSAWAASGDARAW 234
                        VGLSLRAGDEPSTSAWAASGDARAW
Sbjct: 197 AITAVAASSSSSSVGLSLRAGDEPSTSAWAASGDARAW 234




 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 38/50 (76%)

Query: 1  MEAKVATVTRPPPSLFMVRTASHMGSSMPALPXXXXXXXXXXXXDSPTAP 50
          MEAKVATVTRPPPSLFMVRTASHMGSSMPALP            DSPTAP
Sbjct: 1  MEAKVATVTRPPPSLFMVRTASHMGSSMPALPRCRRGGSRRSRCDSPTAP 50



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.126    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,150,090
Number of extensions: 138911
Number of successful extensions: 491
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 2
Length of query: 234
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 136
Effective length of database: 11,918,829
Effective search space: 1620960744
Effective search space used: 1620960744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)