BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0489700 Os06g0489700|J065214J16
(135 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0489700 Conserved hypothetical protein 236 3e-63
Os02g0599640 201 2e-52
Os02g0252800 168 1e-42
Os05g0225100 Conserved hypothetical protein 82 1e-16
>Os06g0489700 Conserved hypothetical protein
Length = 135
Score = 236 bits (602), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 121/135 (89%), Positives = 121/135 (89%)
Query: 1 PLGXXXXXXXXXXXXXXCHCRRSRPVVQLPLHGYQRRRPGRWSRYFAFYFVQHDSSPASP 60
PLG CHCRRSRPVVQLPLHGYQRRRPGRWSRYFAFYFVQHDSSPASP
Sbjct: 1 PLGSSSSTSSIVAASPSCHCRRSRPVVQLPLHGYQRRRPGRWSRYFAFYFVQHDSSPASP 60
Query: 61 YLPRLHFALLQQLRAAPAILPLRRSRAVTISEAFSASLLRHWRMIHGGPLPCPRSTGNTV 120
YLPRLHFALLQQLRAAPAILPLRRSRAVTISEAFSASLLRHWRMIHGGPLPCPRSTGNTV
Sbjct: 61 YLPRLHFALLQQLRAAPAILPLRRSRAVTISEAFSASLLRHWRMIHGGPLPCPRSTGNTV 120
Query: 121 GRVRPELSRGLANPV 135
GRVRPELSRGLANPV
Sbjct: 121 GRVRPELSRGLANPV 135
>Os02g0599640
Length = 202
Score = 201 bits (510), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 102/118 (86%), Positives = 106/118 (89%)
Query: 18 CHCRRSRPVVQLPLHGYQRRRPGRWSRYFAFYFVQHDSSPASPYLPRLHFALLQQLRAAP 77
CHCR SRPVVQLPLHGY+ RRPGRWSRYFAFYFVQHDSSPASPYLPRLHFALL+QLRAAP
Sbjct: 85 CHCRHSRPVVQLPLHGYRCRRPGRWSRYFAFYFVQHDSSPASPYLPRLHFALLRQLRAAP 144
Query: 78 AILPLRRSRAVTISEAFSASLLRHWRMIHGGPLPCPRSTGNTVGRVRPELSRGLANPV 135
AILPLRRSRA T+ EAFSASLLRHWRMIHGG L PR GNT RV PELSRGLA+PV
Sbjct: 145 AILPLRRSRAATVPEAFSASLLRHWRMIHGGLLSRPRGIGNTGARVCPELSRGLASPV 202
>Os02g0252800
Length = 382
Score = 168 bits (425), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/98 (81%), Positives = 85/98 (86%)
Query: 18 CHCRRSRPVVQLPLHGYQRRRPGRWSRYFAFYFVQHDSSPASPYLPRLHFALLQQLRAAP 77
CHCR SRP+VQLPLHGY+RR PGRWS YFAF FVQHDSSPAS YLPRLHFA L+Q RAAP
Sbjct: 68 CHCRHSRPMVQLPLHGYRRRHPGRWSHYFAFVFVQHDSSPASSYLPRLHFAFLRQPRAAP 127
Query: 78 AILPLRRSRAVTISEAFSASLLRHWRMIHGGPLPCPRS 115
AILPLR SRA T+ E FSASLLRHWRMIHGGPL PR+
Sbjct: 128 AILPLRHSRAATVLEVFSASLLRHWRMIHGGPLSRPRA 165
>Os05g0225100 Conserved hypothetical protein
Length = 236
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 18 CHCRRSRPVVQLPLHGYQRRRPGRWSRYFAFYFVQHDSSPASP 60
CHCRRSRPV+QLPLHGY+RR GRWSRY A YF+QHDSSPA P
Sbjct: 194 CHCRRSRPVIQLPLHGYRRRHLGRWSRYIALYFIQHDSSPALP 236
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.141 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,867,526
Number of extensions: 198275
Number of successful extensions: 664
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 664
Number of HSP's successfully gapped: 4
Length of query: 135
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 45
Effective length of database: 12,336,541
Effective search space: 555144345
Effective search space used: 555144345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 150 (62.4 bits)