Os06g0489700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0489700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 142.23 | 0.56 | 4.13 | 0.583 | 0.719 | 2.51 | 1.47 | 1.69 | 0.315 | 18.4 | 20.24 | 333 | -- | -- |
| 143.08 | 0.557 | 4.09 | 0.747 | 0.699 | 2.13 | 1.25 | -- | 0.412 | 18 | 21.07 | 368 | -- | -- |
| 145.77 | 0.562 | 4.11 | 0.62 | 0.796 | 1.51 | -- | -0.187 | 0.348 | 18.1 | 21.55 | 321 | -- | -- |
| 144.67 | 0.56 | 4.1 | 0.587 | 0.751 | 1.58 | -- | -- | 0.377 | 18.1 | 22.14 | 373 | -- | -- |
| 172.51 | 0.612 | 4.09 | 0.577 | -- | 1.14 | -- | -0.7 | 0.353 | -- | 21.98 | 551 | -- | -- |
| 163.71 | 0.6 | 4.14 | 0.258 | 0.636 | -- | 1.38 | -- | 0.185 | 18.4 | -- | -- | -- | -- |
| 168.26 | 0.607 | 4.14 | 0.242 | 0.645 | -- | -- | -- | 0.19 | 18.1 | -- | -- | -- | -- |
| 172.87 | 0.612 | 4.09 | 0.524 | -- | 1.48 | -- | -- | 0.314 | -- | 21.24 | 373 | -- | -- |
| 152.9 | 0.576 | 4.11 | -- | 0.718 | 1.38 | -- | -- | 0.3 | 18 | 22.22 | 362 | -- | -- |
| 189.84 | 0.644 | 4.13 | 0.224 | -- | -- | -- | -- | 0.176 | -- | -- | -- | -- | -- |
| 169.8 | 0.61 | 4.14 | -- | 0.642 | -- | -- | -- | 0.164 | 18.1 | -- | -- | -- | -- |
| 179.15 | 0.623 | 4.11 | -- | -- | 1.12 | -- | -- | 0.239 | -- | 21.54 | 373 | -- | -- |
| 191.15 | 0.645 | 4.13 | -- | -- | -- | -- | -- | 0.151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 138.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 10 |
| 5 | 139.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 13 |
| 8 | 139.20 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 6 |
| 9 | 139.27 | temperature | 25 | 270 | < th | dose dependent | sin | 7 | NA |
| 10 | 139.30 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 14 |
| 40 | 140.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 43 | 140.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 85 | 141.29 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 119 | 141.57 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 150 | 141.93 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 335 | 143.58 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 343 | 143.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 360 | 143.77 | temperature | 20 | 270 | < th | dose dependent | no | NA | NA |
| 377 | 143.82 | temperature | 20 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 426 | 144.10 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 22 |
| 428 | 144.11 | temperature | 20 | 270 | < th | dose dependent | sin | 0 | NA |
| 459 | 144.24 | temperature | 20 | 30 | < th | dose dependent | sin | 4 | NA |
| 476 | 144.33 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 491 | 144.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 22 |
| 495 | 144.44 | temperature | 20 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 511 | 144.57 | radiation | 1 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 512 | 144.57 | radiation | 1 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 516 | 144.58 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 522 | 144.61 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 551 | 144.70 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 566 | 144.79 | temperature | 20 | 270 | < th | dose independent | sin | 5 | NA |
| 587 | 144.88 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 11 |
| 588 | 144.88 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 19 |
| 589 | 144.88 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 22 |
| 595 | 144.90 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 12 |
| 596 | 144.90 | temperature | 15 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 607 | 144.97 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 624 | 145.06 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 9 |
| 649 | 145.16 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 651 | 145.17 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 659 | 145.19 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 14 |
| 662 | 145.19 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 16 |
| 668 | 145.21 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 17 |
| 684 | 145.25 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 14 |
| 687 | 145.25 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 9 |
| 705 | 145.29 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 734 | 145.35 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 16 |
| 756 | 145.39 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 13 |
| 763 | 145.41 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 784 | 145.45 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 796 | 145.47 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 801 | 145.48 | atmosphere | 995 | 43200 | < th | dose independent | sin | 0 | NA |
| 830 | 145.53 | atmosphere | 995 | 43200 | > th | dose independent | sin | 0 | NA |
| 895 | 145.64 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 904 | 145.65 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 17 |
| 910 | 145.66 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 16 |
| 927 | 145.69 | temperature | 20 | 720 | > th | dose independent | sin | 11 | NA |
| 944 | 145.71 | temperature | 20 | 720 | < th | dose independent | sin | 11 | NA |
| 966 | 145.73 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 9 |
| 967 | 145.73 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 9 |
| 979 | 145.75 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 989 | 145.76 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 7 |