BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0352900 Os06g0352900|AK121496
         (845 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0352900  Conserved hypothetical protein                     1256   0.0  

>Os06g0352900 Conserved hypothetical protein
          Length = 845

 Score = 1256 bits (3249), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/845 (76%), Positives = 650/845 (76%)

Query: 1   MRRKKHSDRXXXXXXXXTELFICFXXXXXXXXXXXXXXXXLRXXXXXXXXXXGRTXXXXX 60
           MRRKKHSDR        TELFICF                LR          GRT     
Sbjct: 1   MRRKKHSDRGGGGGGGGTELFICFTSRPSTASASSGAPATLRPSSSSKLLSPGRTGGGAG 60

Query: 61  XXXXXXXXPVPPLHPXXXXXXXXXXXXXXXQSPMFPXXXXXXXXXXXXFEPAEPSSPKVT 120
                   PVPPLHP               QSPMFP            FEPAEPSSPKVT
Sbjct: 61  AVAGADSAPVPPLHPSLSRRLRNSGSLKGGQSPMFPSGSSGGRRGRGGFEPAEPSSPKVT 120

Query: 121 CIGQVRVKGGKRKPKHXXXXXXXXXXXXXXXXXXXXXXXXFRRAGDDRDGPAGKNQGWVY 180
           CIGQVRVKGGKRKPKH                        FRRAGDDRDGPAGKNQGWVY
Sbjct: 121 CIGQVRVKGGKRKPKHASAAALRSRSRRGGVGGGGSAEASFRRAGDDRDGPAGKNQGWVY 180

Query: 181 QIPVNICEALKTFGSCGGRSLCSPSRAAGAGERGSLSAADKKRRRPPASGSWLCGAAVAR 240
           QIPVNICEALKTFGSCGGRSLCSPSRAAGAGERGSLSAADKKRRRPPASGSWLCGAAVAR
Sbjct: 181 QIPVNICEALKTFGSCGGRSLCSPSRAAGAGERGSLSAADKKRRRPPASGSWLCGAAVAR 240

Query: 241 CLLAIQEEEDDEIGKGAAVVPAEDVKASEVGLVMQGWDXXXXXXXXXXXXXXXXKKDEIL 300
           CLLAIQEEEDDEIGKGAAVVPAEDVKASEVGLVMQGWD                KKDEIL
Sbjct: 241 CLLAIQEEEDDEIGKGAAVVPAEDVKASEVGLVMQGWDVEEEESTVVVGEVEVEKKDEIL 300

Query: 301 VVGKEEEGRVSVCIPPRNALLLMRCRSDPVRMAALATRFWGSPAAANVSQVDNVKXXXXX 360
           VVGKEEEGRVSVCIPPRNALLLMRCRSDPVRMAALATRFWGSPAAANVSQVDNVK     
Sbjct: 301 VVGKEEEGRVSVCIPPRNALLLMRCRSDPVRMAALATRFWGSPAAANVSQVDNVKDENEN 360

Query: 361 XXXXXXXXXXXXXXGADTDKECKEQARDSAVSTKEAGCRECDGSLHDGCEAGQVDPLETE 420
                         GADTDKECKEQARDSAVSTKEAGCRECDGSLHDGCEAGQVDPLETE
Sbjct: 361 DDDEEEEEDEEDEDGADTDKECKEQARDSAVSTKEAGCRECDGSLHDGCEAGQVDPLETE 420

Query: 421 AVETSECGDLGEEASEYGDCRXXXXXXXXXXAPIVRKDSVLEVALSGEATGRDIQLPLLE 480
           AVETSECGDLGEEASEYGDCR          APIVRKDSVLEVALSGEATGRDIQLPLLE
Sbjct: 421 AVETSECGDLGEEASEYGDCREDEEKIEPEEAPIVRKDSVLEVALSGEATGRDIQLPLLE 480

Query: 481 MVETVAEAQEEVSVPGPEKEEQEMKGRRSSNCCSPSTALKEXXXXXXXXXXXXXXXXXXX 540
           MVETVAEAQEEVSVPGPEKEEQEMKGRRSSNCCSPSTALKE                   
Sbjct: 481 MVETVAEAQEEVSVPGPEKEEQEMKGRRSSNCCSPSTALKEDRKLRRLSSRRRVGSSSRA 540

Query: 541 XXXXXXXXXXHSFSAETEARRSSFSSLKDSRRASFSIDRDGRRWSFSIEQEHLVAEPKVL 600
                     HSFSAETEARRSSFSSLKDSRRASFSIDRDGRRWSFSIEQEHLVAEPKVL
Sbjct: 541 SSGSDRVGRRHSFSAETEARRSSFSSLKDSRRASFSIDRDGRRWSFSIEQEHLVAEPKVL 600

Query: 601 MGSRKGQKISSEPESEKDCAVHAAPNSAEETLESHDDGKEEATLDGQEEGTTQETQVDXX 660
           MGSRKGQKISSEPESEKDCAVHAAPNSAEETLESHDDGKEEATLDGQEEGTTQETQVD  
Sbjct: 601 MGSRKGQKISSEPESEKDCAVHAAPNSAEETLESHDDGKEEATLDGQEEGTTQETQVDEK 660

Query: 661 XXXXXXXXXXAQDVVEEQKQRRKKSGELPDCLLLMMYEPKLSMEVSKETWVCSTDFVHWK 720
                     AQDVVEEQKQRRKKSGELPDCLLLMMYEPKLSMEVSKETWVCSTDFVHWK
Sbjct: 661 GEKVEVGGVEAQDVVEEQKQRRKKSGELPDCLLLMMYEPKLSMEVSKETWVCSTDFVHWK 720

Query: 721 SYXXXXXXXXXXXKAGCNAAPAEELKDTDNAEGTSDAKNTEESVAPASANLVSMPPPVVQ 780
           SY           KAGCNAAPAEELKDTDNAEGTSDAKNTEESVAPASANLVSMPPPVVQ
Sbjct: 721 SYQGQNRRNRRQQKAGCNAAPAEELKDTDNAEGTSDAKNTEESVAPASANLVSMPPPVVQ 780

Query: 781 KSPLKEAAEQKFKIELPLVTGAATYAPFVLKRCKSEPMRSSARLAPDACFWKDRHRPLNA 840
           KSPLKEAAEQKFKIELPLVTGAATYAPFVLKRCKSEPMRSSARLAPDACFWKDRHRPLNA
Sbjct: 781 KSPLKEAAEQKFKIELPLVTGAATYAPFVLKRCKSEPMRSSARLAPDACFWKDRHRPLNA 840

Query: 841 TGVGF 845
           TGVGF
Sbjct: 841 TGVGF 845



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.129    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,023,204
Number of extensions: 907120
Number of successful extensions: 2854
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2842
Number of HSP's successfully gapped: 1
Length of query: 845
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 736
Effective length of database: 11,344,475
Effective search space: 8349533600
Effective search space used: 8349533600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)