Os06g0352900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0352900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.2 | 0.319 | 10.2 | 0.529 | 0.862 | 1.17 | 0.367 | 0.206 | 0.122 | 19.5 | 24.86 | 1351 | -- | -- |
| 46.17 | 0.316 | 10.2 | 0.476 | 0.854 | 1.21 | 0.395 | -- | 0.0889 | 19.5 | 24.58 | 1340 | -- | -- |
| 46.51 | 0.318 | 10.2 | 0.548 | 0.866 | 1.18 | -- | 0.318 | 0.11 | 19.5 | 24.45 | 1339 | -- | -- |
| 46.53 | 0.318 | 10.2 | 0.455 | 0.862 | 1.21 | -- | -- | 0.0884 | 19.5 | 24.54 | 1339 | -- | -- |
| 56.8 | 0.351 | 10.2 | 0.479 | -- | 1.7 | -- | 0.206 | 0.021 | -- | 23.01 | 723 | -- | -- |
| 100.83 | 0.471 | 10.2 | 0.874 | 0.85 | -- | 0.346 | -- | 0.259 | 20.3 | -- | -- | -- | -- |
| 101.2 | 0.471 | 10.2 | 0.864 | 0.85 | -- | -- | -- | 0.259 | 20.3 | -- | -- | -- | -- |
| 56.87 | 0.351 | 10.2 | 0.444 | -- | 1.73 | -- | -- | -0.00212 | -- | 23.02 | 710 | -- | -- |
| 51.48 | 0.334 | 10.3 | -- | 0.863 | 1.31 | -- | -- | -0.0123 | 19.5 | 23.85 | 1357 | -- | -- |
| 141.15 | 0.555 | 10.2 | 0.858 | -- | -- | -- | -- | 0.249 | -- | -- | -- | -- | -- |
| 120.87 | 0.514 | 10.2 | -- | 0.846 | -- | -- | -- | 0.163 | 20.3 | -- | -- | -- | -- |
| 61.58 | 0.365 | 10.3 | -- | -- | 1.82 | -- | -- | -0.0641 | -- | 23 | 737 | -- | -- |
| 160.57 | 0.591 | 10.2 | -- | -- | -- | -- | -- | 0.154 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 14 |
| 3 | 46.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 4 | 16 |
| 47 | 46.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 68 | 46.34 | temperature | 25 | 1440 | > th | dose dependent | sin | 22 | NA |
| 89 | 46.38 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 112 | 46.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 119 | 46.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 328 | 48.00 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 379 | 48.82 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 415 | 49.20 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 13 |
| 417 | 49.22 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 6 |
| 464 | 49.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 496 | 49.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 497 | 49.65 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 6 |
| 498 | 49.65 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 499 | 49.65 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 508 | 49.67 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 542 | 49.75 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 590 | 49.90 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 596 | 49.93 | temperature | 30 | 1440 | < th | dose independent | sin | 20 | NA |
| 599 | 49.94 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 600 | 49.94 | temperature | 10 | 1440 | > th | dose dependent | sin | 23 | NA |
| 604 | 49.95 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 649 | 50.03 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 666 | 50.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 5 |
| 712 | 50.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 19 |
| 721 | 50.16 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 723 | 50.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 14 |
| 737 | 50.18 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 791 | 50.29 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 804 | 50.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 21 |
| 815 | 50.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 818 | 50.31 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 843 | 50.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 855 | 50.32 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 15 |
| 971 | 50.43 | temperature | 30 | 1440 | > th | dose independent | sin | 19 | NA |