BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0330400 Os06g0330400|Os06g0330400
(273 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0330400 Sterol desaturase family protein 474 e-134
Os02g0745700 Sterol desaturase family protein 295 2e-80
Os06g0226950 Sterol desaturase family protein 290 9e-79
Os07g0627700 Sterol desaturase family protein 266 1e-71
Os01g0658600 247 7e-66
>Os06g0330400 Sterol desaturase family protein
Length = 273
Score = 474 bits (1221), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/257 (91%), Positives = 234/257 (91%)
Query: 1 MDPLSDEALAIVVPIVVYWLYSGLYMALGHSISMDKYRLHSKEEEDAKNLVSKRDVVMGX 60
MDPLSDEALAIVVPIVVYWLYSGLYMALGHSISMDKYRLHSKEEEDAKNLVSKRDVVMG
Sbjct: 1 MDPLSDEALAIVVPIVVYWLYSGLYMALGHSISMDKYRLHSKEEEDAKNLVSKRDVVMGV 60
Query: 61 XXXXXXXXXXXXXTFTLAGEXXXXXXXXXSPSSWLAVAARFAVGMVVLDGWQYAWHRWMH 120
TFTLAGE SPSSWLAVAARFAVGMVVLDGWQYAWHRWMH
Sbjct: 61 LLQQLVQAAVAAATFTLAGERRTTTATTASPSSWLAVAARFAVGMVVLDGWQYAWHRWMH 120
Query: 121 TNRFLYRRVHSWHHRLVAPYAFGAQYNHPAEGLLLDTVGGAVAFLASGMSPRASVVFFSL 180
TNRFLYRRVHSWHHRLVAPYAFGAQYNHPAEGLLLDTVGGAVAFLASGMSPRASVVFFSL
Sbjct: 121 TNRFLYRRVHSWHHRLVAPYAFGAQYNHPAEGLLLDTVGGAVAFLASGMSPRASVVFFSL 180
Query: 181 CTAKGVDDHCGLWLPAASPLQRVFRNNAAYHDVHHQRRGGRYNFSQPFFVTWDKVLGTHM 240
CTAKGVDDHCGLWLPAASPLQRVFRNNAAYHDVHHQRRGGRYNFSQPFFVTWDKVLGTHM
Sbjct: 181 CTAKGVDDHCGLWLPAASPLQRVFRNNAAYHDVHHQRRGGRYNFSQPFFVTWDKVLGTHM 240
Query: 241 PYVVEERPGGGLQVRPV 257
PYVVEERPGGGLQVRPV
Sbjct: 241 PYVVEERPGGGLQVRPV 257
>Os02g0745700 Sterol desaturase family protein
Length = 265
Score = 295 bits (756), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 140/253 (55%), Positives = 172/253 (67%), Gaps = 4/253 (1%)
Query: 5 SDEALAIVVPIVVYWLYSGLYMALGHSISMDKYRLHSKEEEDAKNLVSKRDVVMGXXXXX 64
SDE L VPI VYWLYSGLY+AL +D YRLH +EEE AKN+VS+ VV G
Sbjct: 6 SDELLGTFVPIAVYWLYSGLYLALDGVERLDVYRLHPREEEAAKNVVSRGTVVRGVLVQQ 65
Query: 65 XXXXXXXXXTFTLAGEXXXXXXXXXSPSSWLAVAARFAVGMVVLDGWQYAWHRWMHTNRF 124
F + G+ PS+ L + +FA+ M V+D WQY HR+MH N+F
Sbjct: 66 AFQVAVSLTLFAVIGDESDIEQK--QPSA-LVILLQFAIAMFVMDTWQYFMHRYMHINKF 122
Query: 125 LYRRVHSWHHRLVAPYAFGAQYNHPAEGLLLDTVGGAVAFLASGMSPRASVVFFSLCTAK 184
LY+ +HS HH LV PY+FGA YNHP EGL+LDT+GGA++FL SGM+PR S+ FFS T K
Sbjct: 123 LYKHIHSKHHTLVVPYSFGALYNHPLEGLILDTIGGALSFLVSGMTPRTSIFFFSFATIK 182
Query: 185 GVDDHCGLWLPAASPLQRVFRNNAAYHDVHHQRRGGRYNFSQPFFVTWDKVLGTHMPYVV 244
VDDHCGLWLP + L +F NN+AYHD+HHQ G +YNFSQPFFV WDK+LGT+MPY +
Sbjct: 183 TVDDHCGLWLP-GNILHALFNNNSAYHDIHHQLYGNKYNFSQPFFVIWDKILGTYMPYSI 241
Query: 245 EERPGGGLQVRPV 257
E R GGG + RPV
Sbjct: 242 EHRKGGGFESRPV 254
>Os06g0226950 Sterol desaturase family protein
Length = 264
Score = 290 bits (741), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 138/254 (54%), Positives = 171/254 (67%), Gaps = 5/254 (1%)
Query: 4 LSDEALAIVVPIVVYWLYSGLYMALGHSISMDKYRLHSKEEEDAKNLVSKRDVVMGXXXX 63
+SDE L VPI VYWLYSGLY+ L ++ MD YRLH K EE KN+VSK VV G
Sbjct: 5 VSDELLGTFVPIAVYWLYSGLYIVLD-AMGMDDYRLHPKGEEATKNVVSKWTVVKGVLVQ 63
Query: 64 XXXXXXXXXXTFTLAGEXXXXXXXXXSPSSWLAVAARFAVGMVVLDGWQYAWHRWMHTNR 123
FT+ G+ P + L +A +F + M V+D WQY HR+MH N+
Sbjct: 64 QSFQIAVSLLLFTIIGDESGTVRK--QPPA-LVIALQFIIAMFVMDTWQYFMHRYMHVNK 120
Query: 124 FLYRRVHSWHHRLVAPYAFGAQYNHPAEGLLLDTVGGAVAFLASGMSPRASVVFFSLCTA 183
FLY+ VHS HH LV PYAFGA YNHP EGL+LDT+GGA++FL +GM+P+ ++ FFS T
Sbjct: 121 FLYKHVHSKHHTLVVPYAFGALYNHPLEGLILDTIGGALSFLIAGMTPKTAIFFFSFATI 180
Query: 184 KGVDDHCGLWLPAASPLQRVFRNNAAYHDVHHQRRGGRYNFSQPFFVTWDKVLGTHMPYV 243
K VDDHCGLWLP + L F NN+AYHD+HHQ G +YNFSQPFFV WDK+LGT+MPY
Sbjct: 181 KTVDDHCGLWLP-GNILHVFFSNNSAYHDIHHQLYGNKYNFSQPFFVMWDKILGTYMPYT 239
Query: 244 VEERPGGGLQVRPV 257
+E R GGG + RP+
Sbjct: 240 LENRKGGGFEARPI 253
>Os07g0627700 Sterol desaturase family protein
Length = 258
Score = 266 bits (680), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 125/254 (49%), Positives = 162/254 (63%), Gaps = 5/254 (1%)
Query: 4 LSDEALAIVVPIVVYWLYSGLYMALGHSISMDKYRLHSKEEEDAKNLVSKRDVVMGXXXX 63
+SDE + PI +YW+Y+G Y + H +++YRLH++ EE+ KNLV+ VV G
Sbjct: 8 VSDETMGTFAPIALYWVYAGGYQLVLHRRPLERYRLHTRAEEEEKNLVALPAVVRGVLLQ 67
Query: 64 XXXXXXXXXXTFTLAGEXXXXXXXXXSPSSWLAVAARFAVGMVVLDGWQYAWHRWMHTNR 123
F + + + A +F V M+V+D WQY HR+MH N+
Sbjct: 68 QLVQAIVAMILFMVTSDSSAVVVQ----PPIIIQAFQFLVAMLVMDSWQYFVHRYMHQNK 123
Query: 124 FLYRRVHSWHHRLVAPYAFGAQYNHPAEGLLLDTVGGAVAFLASGMSPRASVVFFSLCTA 183
FLYR +HS HHRL+ PYA GA YNHP EGLLLDTVGGA++FL SGM+PR SV FF
Sbjct: 124 FLYRHIHSQHHRLIVPYAIGALYNHPLEGLLLDTVGGAISFLVSGMTPRTSVFFFCFAVL 183
Query: 184 KGVDDHCGLWLPAASPLQRVFRNNAAYHDVHHQRRGGRYNFSQPFFVTWDKVLGTHMPYV 243
K VDDHCGLWLP + Q +F+NN AYHDVHHQ +G +YN+SQPFF WD++LGTHMPY
Sbjct: 184 KTVDDHCGLWLP-YNIFQSLFQNNTAYHDVHHQLQGSKYNYSQPFFSIWDRILGTHMPYN 242
Query: 244 VEERPGGGLQVRPV 257
+ R GG + RP+
Sbjct: 243 LVRRKEGGFEARPL 256
>Os01g0658600
Length = 283
Score = 247 bits (630), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 132/276 (47%), Positives = 171/276 (61%), Gaps = 20/276 (7%)
Query: 1 MDPLSDEALAIVV-PIVVYWLYSGLYMALGHSISMDKYRLHSKEEEDAKNLVSKRDVVMG 59
M +S E LA+ + P+ VYWLYSG+Y ALG ++D+YRLHS+ +E++ N+ SK++VV G
Sbjct: 1 MGFISGEELAVTLAPVAVYWLYSGIYEALGSVRALDRYRLHSRRDEESNNMASKKEVVKG 60
Query: 60 XXXXXXXXXXXXXXTFTLAGEXXXXXXXXXS---------------PSSWLAVAARFAVG 104
L E + ++ L VAARF V
Sbjct: 61 VLLQQAIQVAISLAVLKLTSEKDGGAGDVKAGHASAPAAAPSSSSAAAALLDVAARFGVA 120
Query: 105 MVVLDGWQYAWHRWMHTNRFLYRRVHSWHHRLVAPYAFGAQYNHPAEGLLLDTVGGAVAF 164
M VLD WQY HR MH++R++YRR HSWHHR+VAPYAF AQY HP +G+L + + GA A+
Sbjct: 121 MFVLDAWQYFAHRLMHSSRYMYRRFHSWHHRVVAPYAFAAQYGHPVDGVLTEALSGAAAY 180
Query: 165 LASGMSPRASVVFFSLCTAKGVDDHCGLWLPAASPLQRVFRNNAAYHDVHHQRRGGRYNF 224
LASG+ PRA+ F + T KG+DDHCGL +P +PL F NN AYHDVHHQ GGR NF
Sbjct: 181 LASGLPPRAAAFFLAFATVKGIDDHCGLLVP-WNPLHAAFANNTAYHDVHHQLSGGRRNF 239
Query: 225 SQPFFVTWDKVLGTHMPYVV---EERPGGGLQVRPV 257
SQPFFV WD++LGTH Y V E GGGL+ +P+
Sbjct: 240 SQPFFVVWDRLLGTHAGYTVTARERNNGGGLEAKPI 275
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.137 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,980,810
Number of extensions: 357460
Number of successful extensions: 950
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 945
Number of HSP's successfully gapped: 6
Length of query: 273
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 174
Effective length of database: 11,866,615
Effective search space: 2064791010
Effective search space used: 2064791010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)