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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0330400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Sterol desaturase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0283) R2 : 9.94e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0127 (0.0596) R2dN8 : 0.000128 R2N8 : 9.94e-05
σ : 0.533
deviance : 130.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
120.65 0.512 2.42 2.61 0.173 23.4 0.0248 -142 -0.0233 13.3 995 1442 -- --
127.15 0.529 2.91 -0.225 0.165 0.145 0.0326 -- -0.0365 12.4 995 1442 -- --
120.65 0.512 2.42 2.61 0.173 23.4 -- -142 -0.0233 13.3 995 1442 -- --
122.2 0.515 2.88 -0.296 0.218 -0.908 -- -- 0.0285 10.6 996.7 1214 -- --
122.49 0.515 2.43 2.6 -- 23.3 -- -142 -0.0273 -- 995.1 1421 -- --
127.19 0.529 2.91 -0.227 0.164 -- 0.0335 -- -0.0359 12.3 -- -- -- --
127.19 0.528 2.91 -0.226 0.164 -- -- -- -0.0357 12.4 -- -- -- --
122.58 0.516 2.91 -0.275 -- -1.16 -- -- -0.0312 -- 996.5 1333 -- --
123.15 0.517 2.89 -- 0.159 -1.05 -- -- 0.0226 10.8 996.5 1250 -- --
128.89 0.53 2.91 -0.231 -- -- -- -- -0.0383 -- -- -- -- --
128.54 0.53 2.9 -- 0.168 -- -- -- -0.0106 12.4 -- -- -- --
124.57 0.52 2.9 -- -- -1.13 -- -- 0.00886 -- 996.6 1333 -- --
130.3 0.533 2.91 -- -- -- -- -- -0.0127 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 105.84 atmosphere 1000 10 < th dose independent rect. 7 1
8 105.84 atmosphere 1000 10 < th dose dependent rect. 7 1
66 116.47 temperature 25 270 > th dose dependent rect. 4 2
70 117.16 atmosphere 1000 270 < th dose independent rect. 4 1
108 118.27 temperature 25 270 > th dose independent rect. 4 2
114 118.53 radiation 30 90 > th dose independent rect. 7 1
145 118.85 radiation 30 90 > th dose dependent rect. 7 1
189 119.56 temperature 25 1440 > th dose dependent rect. 3 1
196 119.67 atmosphere 995 1440 > th dose independent rect. 12 18
199 119.69 temperature 25 270 > th dose dependent rect. 3 4
211 119.85 atmosphere 995 1440 > th dose independent rect. 16 21
212 119.85 atmosphere 995 1440 > th dose independent rect. 1 23
214 119.88 atmosphere 995 1440 > th dose independent rect. 12 20
216 119.90 atmosphere 995 1440 > th dose independent rect. 12 9
217 119.91 atmosphere 995 1440 > th dose independent rect. 12 6
240 120.13 atmosphere 995 1440 > th dose independent rect. 10 22
245 120.17 atmosphere 995 1440 > th dose independent rect. 12 12
251 120.21 atmosphere 995 1440 > th dose independent rect. 1 20
254 120.23 atmosphere 1000 720 < th dose dependent rect. 21 11
259 120.25 atmosphere 995 4320 < th dose independent rect. 16 1
269 120.33 atmosphere 995 1440 > th dose independent rect. 16 14
273 120.37 atmosphere 995 1440 > th dose independent rect. 19 23
286 120.42 atmosphere 995 1440 > th dose independent rect. 12 23
290 120.43 atmosphere 995 4320 < th dose dependent rect. 16 1
317 120.55 atmosphere 995 1440 > th dose independent rect. 7 23
318 120.57 temperature 25 90 > th dose independent rect. 7 1
333 120.64 atmosphere 995 1440 > th dose independent sin 11 NA
334 120.64 atmosphere 995 1440 > th dose independent sin 22 NA
335 120.64 atmosphere 995 1440 < th dose independent sin 7 NA
337 120.64 atmosphere 995 1440 < th dose independent rect. 14 1
381 120.64 atmosphere 995 1440 < th dose dependent rect. 14 1
426 120.65 atmosphere 995 1440 > th dose independent no NA NA
427 120.65 atmosphere 995 1440 < th dose independent sin 17 NA
440 120.65 atmosphere 995 1440 < th dose independent no NA NA
679 120.65 atmosphere 995 1440 < th dose dependent sin 7 NA
680 120.65 atmosphere 995 1440 < th dose dependent sin 19 NA
692 120.65 atmosphere 995 1440 < th dose dependent no NA NA
931 120.66 atmosphere 995 1440 < th dose independent sin 10 NA