BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0328400 Os06g0328400|AK121604
         (624 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0328400  Conserved hypothetical protein                      192   8e-49

>Os06g0328400 Conserved hypothetical protein
          Length = 624

 Score =  192 bits (487), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 166/457 (36%), Positives = 166/457 (36%)

Query: 39  HLCRVVQHGVQGEHIPDEHQXXXXXXXXXXXXXXXXXASRQLQXXXXXXXXXXXXXXXXX 98
           HLCRVVQHGVQGEHIPDEHQ                 ASRQLQ                 
Sbjct: 39  HLCRVVQHGVQGEHIPDEHQRPRRGRRVRRGVRARPAASRQLQRLPRPHERVHRRRRREP 98

Query: 99  XXXXXARHGEAGVXXXXXXXXXXXXXXXVGEXXXXXXXXXXXXXXXXXXXXXXXXXXWHV 158
                ARHGEAGV               VGE                          WHV
Sbjct: 99  VRGLGARHGEAGVRPRRQPCRPRRQRRPVGEGRAAGAVRHQARRRQRQQLLRLGRLRWHV 158

Query: 159 SPRVDVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDGHAVPAQLPAHVEH 218
           SPRVDVH                                     VDGHAVPAQLPAHVEH
Sbjct: 159 SPRVDVHGQVRRRRAQPQAAVAGARRAARPLRVRRREGLLRLLRVDGHAVPAQLPAHVEH 218

Query: 219 DGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPVHQEEEAQSRRRSXXXX 278
           DGG                                      VPVHQEEEAQSRRRS    
Sbjct: 219 DGGAARRRQPLLRRRPDAAEAGAGRRRAVRRRRARHRRCGGVPVHQEEEAQSRRRSGVAV 278

Query: 279 XXXXXXXXXXXXXXXXPRRDAQGVRVHGAEEGDGGLRREEQARPGWLXXXXXXXXXXXXX 338
                           PRRDAQGVRVHGAEEGDGGLRREEQARPGWL             
Sbjct: 279 VDGGVQVQQEQHQPEEPRRDAQGVRVHGAEEGDGGLRREEQARPGWLRRGVQGRRRRRQR 338

Query: 339 XXXXXXXXXAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGVRLHAEX 398
                    AV                                       AAGVRLHAE 
Sbjct: 339 RRERGGGRQAVLGGQHQGPGGLPRRAQHHQPPPPPQPRPPSRVVPSERRAAAGVRLHAER 398

Query: 399 XXXXXXXXXXXXXXXXXXXXXVQHRRRRGGGAELXXXXXXXXXXXXXHQAVEHHAXXXXX 458
                                VQHRRRRGGGAEL             HQAVEHHA     
Sbjct: 399 QPGQAPLRRRGGGAGAELGAEVQHRRRRGGGAELPPPRVRPAGNPPRHQAVEHHARLRLR 458

Query: 459 XXXXXXXXXXXXXXXQDLLHRDGGRAGDDGLHRAGVL 495
                          QDLLHRDGGRAGDDGLHRAGVL
Sbjct: 459 RPPRRLRPRPRPRLRQDLLHRDGGRAGDDGLHRAGVL 495



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,213,153
Number of extensions: 121166
Number of successful extensions: 319
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 2
Length of query: 624
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 517
Effective length of database: 11,448,903
Effective search space: 5919082851
Effective search space used: 5919082851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)