Os06g0328400 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0328400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.41	(0.0566)	R²	:	0.538
β₁	:	1.19	(0.211)	R²_dD	:	0.033	R²_D	:	-0.142
β₂	:	0.608	(0.142)	R²_dC	:	0.0193	R²_C	:	-0.125
β₃	:	3.16	(0.501)	R²_dE	:	0.0433	R²_E	:	-0.108
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	2.64	(0.121)	R²_dN8	:	0.654	R²_N8	:	0.418
σ	:	1.06
deviance	:	513.12
__

_____

C
peak time of C	:	20.9
E
wheather	:	precipitation
threshold	:	0.3312
memory length	:	513
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
505.05	1.06	3.39	1.32	0.618	1.38	1.54	5.91	2.62	21.1	0.3471	515	--	--
505.95	1.05	3.4	1.25	0.614	2.84	1.4	--	2.66	20.8	0.3732	515	--	--
512.95	1.05	3.38	1.27	0.602	1.51	--	6.25	2.63	21	0.3981	513	--	--
513.12	1.06	3.41	1.19	0.608	3.16	--	--	2.64	20.9	0.3312	513	--	--
533.33	1.08	3.37	1.26	--	1.69	--	6.74	2.62	--	0.415	510	--	--
543.29	1.09	3.43	1.5	0.734	--	2.02	--	2.57	21.4	--	--	--	--
557.99	1.11	3.43	1.42	0.727	--	--	--	2.57	21.3	--	--	--	--
533.79	1.08	3.4	1.14	--	3.46	--	--	2.63	--	0.3918	511	--	--
546.26	1.09	3.44	--	0.601	3.74	--	--	2.53	21.1	0.2101	514	--	--
588.76	1.13	3.41	1.43	--	--	--	--	2.57	--	--	--	--	--
611.45	1.16	3.47	--	0.728	--	--	--	2.41	21.4	--	--	--	--
566.25	1.11	3.42	--	--	4.01	--	--	2.53	--	0.3021	513	--	--
642.49	1.18	3.45	--	--	--	--	--	2.41	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	487.27	temperature	30.0	43200	> th	dose dependent	rect.	18	1
16	488.49	temperature	30.0	43200	> th	dose dependent	rect.	8	1
30	489.89	radiation	1.0	43200	> th	dose independent	rect.	4	2
40	489.90	radiation	1.0	43200	< th	dose independent	rect.	4	2
43	489.92	radiation	1.0	43200	< th	dose independent	rect.	20	10
45	489.93	radiation	1.0	43200	< th	dose independent	rect.	22	8
52	491.08	temperature	30.0	43200	> th	dose independent	rect.	8	1
66	491.44	temperature	30.0	43200	< th	dose independent	rect.	18	15
67	491.83	temperature	30.0	43200	< th	dose independent	rect.	18	11
70	491.88	temperature	30.0	43200	< th	dose independent	rect.	18	5
75	492.00	temperature	30.0	43200	< th	dose independent	rect.	18	2
79	492.04	temperature	30.0	43200	< th	dose independent	rect.	18	9
82	492.15	temperature	30.0	43200	< th	dose independent	rect.	4	5
83	492.27	temperature	30.0	43200	< th	dose independent	rect.	2	7
87	492.44	temperature	25.0	43200	> th	dose dependent	rect.	4	1
90	492.57	temperature	30.0	43200	< th	dose independent	rect.	8	1
97	493.06	precipitation	0.1	43200	> th	dose dependent	rect.	19	1
100	493.23	precipitation	0.1	43200	> th	dose dependent	rect.	2	3
101	493.27	precipitation	0.1	43200	> th	dose independent	rect.	2	3
116	493.54	temperature	30.0	43200	> th	dose independent	rect.	18	1
130	493.56	precipitation	0.1	43200	< th	dose independent	rect.	2	3
131	493.56	precipitation	0.1	43200	< th	dose dependent	rect.	2	3
132	493.72	humidity	80.0	43200	> th	dose dependent	rect.	20	1
133	493.77	wind	1.0	14400	> th	dose independent	rect.	19	11
134	494.03	wind	1.0	14400	< th	dose dependent	rect.	5	1
136	494.32	humidity	70.0	43200	> th	dose dependent	rect.	18	1
138	494.71	wind	1.0	14400	< th	dose independent	rect.	19	11
140	494.78	wind	1.0	14400	> th	dose independent	rect.	17	13
143	494.97	humidity	80.0	43200	> th	dose dependent	rect.	19	3
144	495.06	wind	1.0	14400	< th	dose independent	rect.	17	13
150	495.49	radiation	30.0	43200	> th	dose independent	rect.	15	1
179	496.27	wind	1.0	14400	< th	dose independent	rect.	12	18
181	496.36	wind	9.0	43200	> th	dose dependent	rect.	13	1
186	496.56	wind	1.0	14400	> th	dose independent	sin	12	NA
192	496.68	wind	1.0	14400	> th	dose independent	rect.	12	18
199	496.88	precipitation	0.1	43200	> th	dose dependent	rect.	23	7
220	497.17	precipitation	0.1	43200	> th	dose dependent	rect.	22	9
226	497.22	precipitation	0.1	43200	< th	dose independent	rect.	23	7
230	497.22	precipitation	0.1	43200	< th	dose dependent	rect.	23	7
249	497.24	precipitation	0.1	43200	> th	dose independent	rect.	23	7
251	497.25	radiation	1.0	43200	> th	dose independent	rect.	17	1
286	497.86	wind	1.0	14400	< th	dose independent	sin	13	NA
299	498.12	precipitation	0.1	43200	> th	dose independent	rect.	22	9
300	498.15	precipitation	0.1	43200	< th	dose independent	rect.	22	9
301	498.15	precipitation	0.1	43200	< th	dose dependent	rect.	22	9
305	498.20	radiation	1.0	43200	< th	dose independent	rect.	17	1
307	498.24	humidity	50.0	43200	> th	dose independent	rect.	14	1
309	498.25	radiation	1.0	43200	< th	dose dependent	rect.	21	9
313	498.27	humidity	80.0	43200	< th	dose independent	rect.	18	1
318	498.30	radiation	1.0	43200	< th	dose dependent	rect.	4	2
341	498.66	wind	1.0	43200	< th	dose dependent	rect.	12	1
363	498.91	humidity	80.0	43200	> th	dose independent	rect.	15	6
367	499.02	humidity	80.0	43200	< th	dose independent	rect.	17	3
369	499.03	humidity	70.0	43200	> th	dose dependent	rect.	16	4
374	499.09	humidity	80.0	43200	> th	dose independent	rect.	18	2
377	499.21	humidity	80.0	43200	< th	dose independent	rect.	14	7
381	499.26	precipitation	0.1	43200	> th	dose independent	rect.	19	1
383	499.27	radiation	1.0	43200	< th	dose independent	rect.	17	6
401	499.38	precipitation	0.1	43200	< th	dose independent	rect.	19	1
402	499.38	precipitation	0.1	43200	< th	dose dependent	rect.	19	1
420	499.52	precipitation	0.1	43200	> th	dose dependent	rect.	22	12
448	499.62	radiation	1.0	43200	> th	dose independent	sin	13	NA
498	499.97	temperature	25.0	43200	> th	dose independent	rect.	4	1
499	499.97	temperature	30.0	43200	> th	dose dependent	sin	11	NA
538	500.35	radiation	1.0	43200	< th	dose independent	sin	13	NA
562	500.47	wind	1.0	14400	< th	dose dependent	rect.	16	14
585	500.64	radiation	1.0	43200	< th	dose dependent	rect.	17	9
588	500.65	precipitation	0.1	43200	< th	dose independent	rect.	23	1
591	500.65	precipitation	0.1	43200	< th	dose dependent	rect.	23	1
594	500.66	precipitation	0.1	43200	> th	dose independent	rect.	23	1
596	500.66	precipitation	0.1	43200	> th	dose dependent	rect.	23	1
598	500.67	wind	1.0	14400	> th	dose independent	rect.	19	19
620	500.73	radiation	10.0	43200	> th	dose independent	rect.	15	1
628	500.75	radiation	1.0	43200	< th	dose dependent	rect.	17	3
642	500.81	temperature	25.0	43200	> th	dose dependent	rect.	21	1
648	500.85	precipitation	0.1	43200	< th	dose independent	rect.	22	12
650	500.85	precipitation	0.1	43200	< th	dose dependent	rect.	22	12
652	500.87	wind	1.0	14400	< th	dose dependent	rect.	19	11
654	500.90	precipitation	0.1	43200	> th	dose independent	rect.	22	12
686	501.11	wind	1.0	14400	< th	dose dependent	rect.	12	19
687	501.12	temperature	30.0	43200	> th	dose independent	sin	11	NA
692	501.16	temperature	30.0	43200	< th	dose independent	sin	11	NA
709	501.18	humidity	80.0	43200	> th	dose independent	rect.	8	14
729	501.36	humidity	50.0	43200	< th	dose independent	rect.	14	1
734	501.37	humidity	80.0	43200	< th	dose independent	rect.	8	13
768	501.57	wind	1.0	14400	> th	dose independent	rect.	17	21
795	501.70	humidity	90.0	43200	> th	dose dependent	rect.	6	1
833	501.83	temperature	25.0	43200	< th	dose independent	rect.	4	1
903	502.18	humidity	70.0	43200	> th	dose dependent	rect.	13	8
971	502.30	humidity	60.0	43200	< th	dose independent	rect.	9	1
984	502.37	wind	1.0	14400	< th	dose independent	rect.	5	1