BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0316100 Os06g0316100|AK105260
         (304 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0316100  Conserved hypothetical protein                      358   2e-99

>Os06g0316100 Conserved hypothetical protein
          Length = 304

 Score =  358 bits (920), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 195/304 (64%), Positives = 195/304 (64%)

Query: 1   MPCCSAVLSXXXXXXXXSRTPPWLHRLHAKGGLSFPSNLHIDDLLYGQHHALXXXXXXXX 60
           MPCCSAVLS        SRTPPWLHRLHAKGGLSFPSNLHIDDLLYGQHHAL        
Sbjct: 1   MPCCSAVLSAAAAAAAASRTPPWLHRLHAKGGLSFPSNLHIDDLLYGQHHALPHPPPPPP 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSTXXXXXXXXXXXXXXXXXXXXXX 120
                                              GST                      
Sbjct: 61  PPQPAKEPPPPTKPKHPKPKQQQHPPPPPPQKPPQGSTNLSLPNPSGSGSGNGNPPPSPQ 120

Query: 121 XXXXTVIADVFVTPSSAPPLIAPIKAFRKQNHPRPRPDKASRPSKENXXXXXXXXXXXXX 180
               TVIADVFVTPSSAPPLIAPIKAFRKQNHPRPRPDKASRPSKEN             
Sbjct: 121 LQLSTVIADVFVTPSSAPPLIAPIKAFRKQNHPRPRPDKASRPSKENKDKASKVKVKKRR 180

Query: 181 XXXXXXXXXXERCSRTEVTVIDTSTDGWKAAKLLLRRGAVWKVRDKASGVSEPEDPTKMK 240
                     ERCSRTEVTVIDTSTDGWKAAKLLLRRGAVWKVRDKASGVSEPEDPTKMK
Sbjct: 181 RSDRAADGDGERCSRTEVTVIDTSTDGWKAAKLLLRRGAVWKVRDKASGVSEPEDPTKMK 240

Query: 241 RRAGLVSKIQRDRXXXXXXXXXATSSGNIHASSGDGMKEPDGPIQALKRSRGPEPEPEII 300
           RRAGLVSKIQRDR         ATSSGNIHASSGDGMKEPDGPIQALKRSRGPEPEPEII
Sbjct: 241 RRAGLVSKIQRDREKQKQKEKEATSSGNIHASSGDGMKEPDGPIQALKRSRGPEPEPEII 300

Query: 301 ALLH 304
           ALLH
Sbjct: 301 ALLH 304



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.132    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,881,122
Number of extensions: 254883
Number of successful extensions: 886
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 883
Number of HSP's successfully gapped: 2
Length of query: 304
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 204
Effective length of database: 11,814,401
Effective search space: 2410137804
Effective search space used: 2410137804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)