Os06g0316100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0316100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.95 | 0.21 | 11.4 | -0.269 | 0.149 | 1.24 | -0.106 | 0.338 | -0.145 | 12 | 6.024 | 459 | -- | -- |
| 20.02 | 0.208 | 11.4 | -0.323 | 0.135 | 1.26 | -0.123 | -- | -0.161 | 11.8 | 6.254 | 440 | -- | -- |
| 20 | 0.208 | 11.4 | -0.27 | 0.146 | 1.24 | -- | 0.349 | -0.144 | 12.1 | 6.217 | 454 | -- | -- |
| 20.08 | 0.209 | 11.4 | -0.327 | 0.144 | 1.25 | -- | -- | -0.16 | 12.2 | 8.088 | 451 | -- | -- |
| 20.58 | 0.211 | 11.4 | -0.283 | -- | 1.26 | -- | 0.267 | -0.148 | -- | 9.03 | 339 | -- | -- |
| 37.26 | 0.286 | 11.4 | -0.0501 | 0.367 | -- | 0.364 | -- | 0.0229 | 16.9 | -- | -- | -- | -- |
| 37.58 | 0.287 | 11.4 | -0.0486 | 0.369 | -- | -- | -- | 0.0248 | 16.7 | -- | -- | -- | -- |
| 20.63 | 0.212 | 11.4 | -0.326 | -- | 1.27 | -- | -- | -0.159 | -- | 10.15 | 337 | -- | -- |
| 22.6 | 0.221 | 11.4 | -- | 0.145 | 1.1 | -- | -- | -0.104 | 13.3 | 9.132 | 437 | -- | -- |
| 44.8 | 0.313 | 11.4 | -0.0626 | -- | -- | -- | -- | 0.0152 | -- | -- | -- | -- | -- |
| 37.64 | 0.287 | 11.4 | -- | 0.37 | -- | -- | -- | 0.0302 | 16.7 | -- | -- | -- | -- |
| 23.23 | 0.224 | 11.4 | -- | -- | 1.16 | -- | -- | -0.111 | -- | 11.98 | 334 | -- | -- |
| 44.91 | 0.313 | 11.4 | -- | -- | -- | -- | -- | 0.0221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.88 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 7 | 19.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 12 | 20.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 80 | 20.47 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 83 | 20.48 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 19 |
| 139 | 20.59 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 204 | 20.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 229 | 20.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 288 | 20.71 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 290 | 20.71 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 304 | 20.72 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 461 | 20.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 489 | 20.82 | temperature | 10 | 1440 | > th | dose dependent | sin | 2 | NA |
| 635 | 20.89 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 757 | 20.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 841 | 20.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 10 |
| 855 | 20.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 882 | 21.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 16 |