BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0308000 Os06g0308000|AK099680
         (537 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0308000  Similar to Trigger factor-like protein              945   0.0  

>Os06g0308000 Similar to Trigger factor-like protein
          Length = 537

 Score =  945 bits (2443), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/512 (91%), Positives = 471/512 (91%)

Query: 26  LAVPTRDXXXXXXXXXXRQFXXXXXXXXXXXXXXXXXXXXXPVASAAVELREASSQGGDS 85
           LAVPTRD          RQF                     PVASAAVELREASSQGGDS
Sbjct: 26  LAVPTRDSCSLLPSSSSRQFAALSTSAASTASRSRAQRRRLPVASAAVELREASSQGGDS 85

Query: 86  VRVTETLQPGSSVKFSVEVPPSICQQCYETTLQEYAKRFKIPGFRPGKVVPENVLINYVG 145
           VRVTETLQPGSSVKFSVEVPPSICQQCYETTLQEYAKRFKIPGFRPGKVVPENVLINYVG
Sbjct: 86  VRVTETLQPGSSVKFSVEVPPSICQQCYETTLQEYAKRFKIPGFRPGKVVPENVLINYVG 145

Query: 146 PKHVQDATVEAILRHTLPQALSSVEDRALEDSVRILTKFEDMANSFSLDNVFRYDVSVDV 205
           PKHVQDATVEAILRHTLPQALSSVEDRALEDSVRILTKFEDMANSFSLDNVFRYDVSVDV
Sbjct: 146 PKHVQDATVEAILRHTLPQALSSVEDRALEDSVRILTKFEDMANSFSLDNVFRYDVSVDV 205

Query: 206 APEVRWLSEDKYKNLKXXXXXXXXXXAEKAAEIELKRRHKALGLLRIVADRGLQVGDLVV 265
           APEVRWLSEDKYKNLK          AEKAAEIELKRRHKALGLLRIVADRGLQVGDLVV
Sbjct: 206 APEVRWLSEDKYKNLKVVVEIDEIVDAEKAAEIELKRRHKALGLLRIVADRGLQVGDLVV 265

Query: 266 LDIFAESITSDGSKGEKIPSAESKGFHLDTEENNNLVPGFLGSLIGIRPGETRSFPLQFP 325
           LDIFAESITSDGSKGEKIPSAESKGFHLDTEENNNLVPGFLGSLIGIRPGETRSFPLQFP
Sbjct: 266 LDIFAESITSDGSKGEKIPSAESKGFHLDTEENNNLVPGFLGSLIGIRPGETRSFPLQFP 325

Query: 326 ESFEQESLQGVRAQFTVVCKELFYRELPELDDSLAGKLLPGCTTMDQVRERILQRCKEVE 385
           ESFEQESLQGVRAQFTVVCKELFYRELPELDDSLAGKLLPGCTTMDQVRERILQRCKEVE
Sbjct: 326 ESFEQESLQGVRAQFTVVCKELFYRELPELDDSLAGKLLPGCTTMDQVRERILQRCKEVE 385

Query: 386 KTAIEQATDNAILDQLGKLVEVDVPRALFQEQGQQLYGAKLLQLQAERKLDKDQLASLSS 445
           KTAIEQATDNAILDQLGKLVEVDVPRALFQEQGQQLYGAKLLQLQAERKLDKDQLASLSS
Sbjct: 386 KTAIEQATDNAILDQLGKLVEVDVPRALFQEQGQQLYGAKLLQLQAERKLDKDQLASLSS 445

Query: 446 QKSVQEYLESERENINRIIKQMLAVGEIFKAENLQFSTEQLVKEVENSIEEFKHYNQDYD 505
           QKSVQEYLESERENINRIIKQMLAVGEIFKAENLQFSTEQLVKEVENSIEEFKHYNQDYD
Sbjct: 446 QKSVQEYLESERENINRIIKQMLAVGEIFKAENLQFSTEQLVKEVENSIEEFKHYNQDYD 505

Query: 506 EGSIKQQVQDVLEAAKVLEWLKENCIIEYIRP 537
           EGSIKQQVQDVLEAAKVLEWLKENCIIEYIRP
Sbjct: 506 EGSIKQQVQDVLEAAKVLEWLKENCIIEYIRP 537



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,231,723
Number of extensions: 537416
Number of successful extensions: 1559
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1558
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 431
Effective length of database: 11,501,117
Effective search space: 4956981427
Effective search space used: 4956981427
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)