Os06g0308000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Trigger factor-like protein.
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Os06g0308000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Trigger factor-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.86 | 0.501 | 11.6 | -1.05 | 1.84 | 1.69 | 0.146 | -2.25 | -0.736 | 20 | 24.9 | 85 | -- | -- |
| 115.95 | 0.502 | 11.6 | -0.771 | 1.85 | 1.48 | 0.0933 | -- | -0.658 | 19.9 | 24.9 | 85 | -- | -- |
| 113.92 | 0.497 | 11.6 | -1.05 | 1.84 | 1.69 | -- | -2.25 | -0.734 | 20 | 24.9 | 85 | -- | -- |
| 115.95 | 0.502 | 11.6 | -0.772 | 1.86 | 1.48 | -- | -- | -0.658 | 19.9 | 24.9 | 78 | -- | -- |
| 219.71 | 0.69 | 11.7 | -1.75 | -- | 2.87 | -- | -4.82 | -1.01 | -- | 24.4 | 458 | -- | -- |
| 151.97 | 0.578 | 11.6 | -0.523 | 2.19 | -- | 0.194 | -- | -0.532 | 18.9 | -- | -- | -- | -- |
| 152.06 | 0.577 | 11.6 | -0.526 | 2.19 | -- | -- | -- | -0.532 | 18.9 | -- | -- | -- | -- |
| 227.31 | 0.702 | 11.6 | -1 | -- | 2.46 | -- | -- | -0.813 | -- | 24.3 | 443 | -- | -- |
| 131.14 | 0.533 | 11.6 | -- | 1.87 | 1.34 | -- | -- | -0.579 | 19.7 | 24.9 | 88 | -- | -- |
| 402.92 | 0.938 | 11.5 | -0.572 | -- | -- | -- | -- | -0.573 | -- | -- | -- | -- | -- |
| 159.35 | 0.591 | 11.6 | -- | 2.19 | -- | -- | -- | -0.473 | 18.9 | -- | -- | -- | -- |
| 252.89 | 0.741 | 11.6 | -- | -- | 2.31 | -- | -- | -0.679 | -- | 24.43 | 437 | -- | -- |
| 411.56 | 0.947 | 11.5 | -- | -- | -- | -- | -- | -0.509 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 99.20 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 2 | 100.48 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 4 | 101.01 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 9 | 102.82 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 18 | 104.23 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 23 | 104.97 | temperature | 25.0 | 720 | > th | dose independent | rect. | 7 | 4 |
| 26 | 105.46 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 31 | 105.66 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 52 | 106.53 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 61 | 106.95 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 66 | 107.23 | temperature | 30.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 70 | 107.34 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 74 | 107.37 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 83 | 107.60 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 88 | 107.76 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 106 | 108.37 | temperature | 25.0 | 90 | > th | dose dependent | sin | 2 | NA |
| 109 | 108.39 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 127 | 108.81 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 141 | 109.25 | temperature | 25.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 188 | 109.99 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 13 |
| 300 | 111.63 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 6 | 8 |
| 329 | 112.05 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 372 | 112.71 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 403 | 113.28 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 409 | 113.35 | temperature | 25.0 | 270 | > th | dose independent | sin | 2 | NA |
| 460 | 113.85 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 468 | 113.94 | temperature | 25.0 | 90 | > th | dose dependent | no | NA | NA |
| 475 | 114.01 | temperature | 25.0 | 270 | < th | dose independent | sin | 2 | NA |
| 479 | 114.04 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 480 | 114.06 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 496 | 114.15 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 536 | 114.39 | temperature | 10.0 | 90 | > th | dose dependent | sin | 0 | NA |
| 561 | 114.59 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 22 |
| 571 | 114.67 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 14 |
| 586 | 114.74 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 594 | 114.78 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 630 | 114.92 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 632 | 114.92 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 633 | 114.92 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 650 | 114.98 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 652 | 114.98 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 655 | 114.99 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 677 | 115.06 | temperature | 25.0 | 720 | < th | dose independent | rect. | 6 | 5 |
| 710 | 115.17 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 9 |
| 714 | 115.19 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 717 | 115.20 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 745 | 115.29 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 746 | 115.29 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 8 |
| 769 | 115.35 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 782 | 115.39 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 20 |
| 788 | 115.43 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 18 |
| 791 | 115.44 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 19 |
| 892 | 115.75 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 902 | 115.78 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 10 |
| 963 | 115.96 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 18 | NA |