BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0297700 Os06g0297700|Os06g0297700
(648 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0297700 Conserved hypothetical protein 818 0.0
>Os06g0297700 Conserved hypothetical protein
Length = 648
Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/440 (93%), Positives = 410/440 (93%)
Query: 209 PKPSSFLSRAASSRIAGRTPSSRCLFLTGGILRHLKTLVAVGLMLGMILGFLSGSVFFSY 268
PKPSSFLSRAASSRIAGRTPSSRCLFLTGGILRHLKTLVAVGLMLGMILGFLSGSVFFSY
Sbjct: 209 PKPSSFLSRAASSRIAGRTPSSRCLFLTGGILRHLKTLVAVGLMLGMILGFLSGSVFFSY 268
Query: 269 KIGLEGKDAVMSLKSHVENGNYSEKIGLKKWLDDNDIPGLVDQYSAKLYDTVWEQIDQLA 328
KIGLEGKDAVMSLKSHVENGNYSEKIGLKKWLDDNDIPGLVDQYSAKLYDTVWEQIDQLA
Sbjct: 269 KIGLEGKDAVMSLKSHVENGNYSEKIGLKKWLDDNDIPGLVDQYSAKLYDTVWEQIDQLA 328
Query: 329 VQYNLTDFTSGFRHFLISQSVDPSGAKGKELITSGPHPYSMKLQVIAKHVKNREWMDIYR 388
VQYNLTDFTSGFRHFLISQSVDPSGAKGKELITSGPHPYSMKLQVIAKHVKNREWMDIYR
Sbjct: 329 VQYNLTDFTSGFRHFLISQSVDPSGAKGKELITSGPHPYSMKLQVIAKHVKNREWMDIYR 388
Query: 389 ELDSFFRELLITREDLVVKAKGLALQGAEIAKXXXXXXXXXXXXXANLMLSITLHIVSGA 448
ELDSFFRELLITREDLVVKAKGLALQGAEIAK ANLMLSITLHIVSGA
Sbjct: 389 ELDSFFRELLITREDLVVKAKGLALQGAEIAKSLLSSSTSVLGGSANLMLSITLHIVSGA 448
Query: 449 AEVLNFVSQLMVFLWVLYYLITVEGGGATEQVIDLLPLSKQVKDRCVEVIDHAISSVLLA 508
AEVLNFVSQLMVFLWVLYYLITVEGGGATEQVIDLLPLSKQVKDRCVEVIDHAISSVLLA
Sbjct: 449 AEVLNFVSQLMVFLWVLYYLITVEGGGATEQVIDLLPLSKQVKDRCVEVIDHAISSVLLA 508
Query: 509 TAKIAIFQGCLTWLLFKLFKVHFVYTSTVFXXXXXXXXXXXXXXXXXFAAGQLLMEGRYV 568
TAKIAIFQGCLTWLLFKLFKVHFVYTSTVF FAAGQLLMEGRYV
Sbjct: 509 TAKIAIFQGCLTWLLFKLFKVHFVYTSTVFAIISALLPILPPWLSSIFAAGQLLMEGRYV 568
Query: 569 LAIVVTVVHLIIMDYGTTVIQEDIPGYNGYLTGLSIIGGMALFPNALEGAILGPLIMTVV 628
LAIVVTVVHLIIMDYGTTVIQEDIPGYNGYLTGLSIIGGMALFPNALEGAILGPLIMTVV
Sbjct: 569 LAIVVTVVHLIIMDYGTTVIQEDIPGYNGYLTGLSIIGGMALFPNALEGAILGPLIMTVV 628
Query: 629 MALKNLYTEFVLADSEETSS 648
MALKNLYTEFVLADSEETSS
Sbjct: 629 MALKNLYTEFVLADSEETSS 648
Score = 231 bits (589), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 113/125 (90%), Positives = 113/125 (90%)
Query: 1 MALVAKGEPNGGACKDGEVMDLPWSEMFRSASLRLPKQEEXXXXXXXXXXXXASAAEEDI 60
MALVAKGEPNGGACKDGEVMDLPWSEMFRSASLRLPKQEE ASAAEEDI
Sbjct: 1 MALVAKGEPNGGACKDGEVMDLPWSEMFRSASLRLPKQEEPTTTKKPQGKGKASAAEEDI 60
Query: 61 GGLSLEPDARLALYIAMAHAGLATALLVVYGLYRLLADFLRPLQWALLCSIPLRETQRAL 120
GGLSLEPDARLALYIAMAHAGLATALLVVYGLYRLLADFLRPLQWALLCSIPLRETQRAL
Sbjct: 61 GGLSLEPDARLALYIAMAHAGLATALLVVYGLYRLLADFLRPLQWALLCSIPLRETQRAL 120
Query: 121 VAFWE 125
VAFWE
Sbjct: 121 VAFWE 125
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.138 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,484,200
Number of extensions: 573414
Number of successful extensions: 1281
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1280
Number of HSP's successfully gapped: 2
Length of query: 648
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 541
Effective length of database: 11,448,903
Effective search space: 6193856523
Effective search space used: 6193856523
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)