BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0267600 Os06g0267600|AK106597
         (373 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0267600  Conserved hypothetical protein                      709   0.0  

>Os06g0267600 Conserved hypothetical protein
          Length = 373

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/373 (93%), Positives = 348/373 (93%)

Query: 1   MVLGCYNSKDYPRESCSSAFMLELESVRPEPQAPLEDYRXXXXXXXXXXXXDQGQLNFLI 60
           MVLGCYNSKDYPRESCSSAFMLELESVRPEPQAPLEDYR            DQGQLNFLI
Sbjct: 1   MVLGCYNSKDYPRESCSSAFMLELESVRPEPQAPLEDYRLHLEILPLQLHLDQGQLNFLI 60

Query: 61  SFFQNDLCNNPNLACENENIDAQSTMYRSDTIADEALLPFFQKFDVKPLVLHINYIPRHF 120
           SFFQNDLCNNPNLACENENIDAQSTMYRSDTIADEALLPFFQKFDVKPLVLHINYIPRHF
Sbjct: 61  SFFQNDLCNNPNLACENENIDAQSTMYRSDTIADEALLPFFQKFDVKPLVLHINYIPRHF 120

Query: 121 DPVALSKGNYAELLNIFPWKGIDLKLKQVSAMGVYGFNNICEIVAAEWLEDISKNQVHKL 180
           DPVALSKGNYAELLNIFPWKGIDLKLKQVSAMGVYGFNNICEIVAAEWLEDISKNQVHKL
Sbjct: 121 DPVALSKGNYAELLNIFPWKGIDLKLKQVSAMGVYGFNNICEIVAAEWLEDISKNQVHKL 180

Query: 181 LKGLPPIKSLVAVSSGTKKLVSLPIKSYKKDRKLLKGMQRGAVAFIRSVSIEXXXXXXXX 240
           LKGLPPIKSLVAVSSGTKKLVSLPIKSYKKDRKLLKGMQRGAVAFIRSVSIE        
Sbjct: 181 LKGLPPIKSLVAVSSGTKKLVSLPIKSYKKDRKLLKGMQRGAVAFIRSVSIEAVGLGVHL 240

Query: 241 XXXXXDMLLKTESALTAIPPPLASREAKRTKDNVRANQPESAQEGLKKAYESLTDGFGRT 300
                DMLLKTESALTAIPPPLASREAKRTKDNVRANQPESAQEGLKKAYESLTDGFGRT
Sbjct: 241 AAGAHDMLLKTESALTAIPPPLASREAKRTKDNVRANQPESAQEGLKKAYESLTDGFGRT 300

Query: 301 ASALIGNPIKVYNRGAGAGSALATAICGAPGAAVAPLSASFRAAHYTLLGIRNSLDPERK 360
           ASALIGNPIKVYNRGAGAGSALATAICGAPGAAVAPLSASFRAAHYTLLGIRNSLDPERK
Sbjct: 301 ASALIGNPIKVYNRGAGAGSALATAICGAPGAAVAPLSASFRAAHYTLLGIRNSLDPERK 360

Query: 361 KESMYKYHGPPQL 373
           KESMYKYHGPPQL
Sbjct: 361 KESMYKYHGPPQL 373



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,920,404
Number of extensions: 442391
Number of successful extensions: 1549
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1549
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 271
Effective length of database: 11,709,973
Effective search space: 3173402683
Effective search space used: 3173402683
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)