BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0250000 Os06g0250000|Os06g0250000
         (133 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0250000                                                      240   3e-64
Os06g0246700  FAR1 domain containing protein                      197   2e-51
Os02g0262250                                                      189   4e-49
Os09g0105100                                                      131   1e-31
Os09g0247100                                                      109   6e-25

>Os06g0250000 
          Length = 133

 Score =  240 bits (612), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 119/133 (89%), Positives = 119/133 (89%)

Query: 1   MNIPELVSGENEPPVHHLLVDDEDKSETYFPINPTDTRMEIPTINLDDTFDYENMYTAGD 60
           MNIPELVSGENEPPVHHLLVDDEDKSETYFPINPTDTRMEIPTINLDDTFDYENMYTAGD
Sbjct: 1   MNIPELVSGENEPPVHHLLVDDEDKSETYFPINPTDTRMEIPTINLDDTFDYENMYTAGD 60

Query: 61  AGSLQAHNVANDEMQVFEEMSDHADTMHXXXXXXXXXXXXXXISSEDSGTDDSEAQSTPS 120
           AGSLQAHNVANDEMQVFEEMSDHADTMH              ISSEDSGTDDSEAQSTPS
Sbjct: 61  AGSLQAHNVANDEMQVFEEMSDHADTMHTSVATGATTATANTISSEDSGTDDSEAQSTPS 120

Query: 121 QDIPCAHKCRTSP 133
           QDIPCAHKCRTSP
Sbjct: 121 QDIPCAHKCRTSP 133



>Os06g0246700 FAR1 domain containing protein
          Length = 821

 Score =  197 bits (501), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/144 (70%), Positives = 105/144 (72%), Gaps = 18/144 (12%)

Query: 1   MNIPELVSGENEPPVHHLLVDDEDKSETYFPINPTDTRMEIPTINLDDTFDYENMYTAGD 60
           MNIPELVSGENEPPVHHLLVDD+DKSETYFPINPTDT MEIP INLDDTFD+E MYTAGD
Sbjct: 1   MNIPELVSGENEPPVHHLLVDDKDKSETYFPINPTDTSMEIPAINLDDTFDFETMYTAGD 60

Query: 61  AGSLQAHNVAND------------------EMQVFEEMSDHADTMHXXXXXXXXXXXXXX 102
           AGSLQAHNVAND                  EMQVFEEMSD  DTMH              
Sbjct: 61  AGSLQAHNVANDEMQVFEANDEMQIFEGDYEMQVFEEMSDRGDTMHTSVATGATTATANT 120

Query: 103 ISSEDSGTDDSEAQSTPSQDIPCA 126
           ISSEDS TDDSEAQS PSQDIPC+
Sbjct: 121 ISSEDSRTDDSEAQSAPSQDIPCS 144



>Os02g0262250 
          Length = 671

 Score =  189 bits (481), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 98/143 (68%), Positives = 104/143 (72%), Gaps = 18/143 (12%)

Query: 2   NIPELVSGENEPPVHHLLVDDEDKSETYFPINPTDTRMEIPTINLDDTFDYENMYTAGDA 61
           +IPELVSGENEPPVHHLLVDDED++ETYFPIN TDT MEIP INLDDTFD+E MYT GDA
Sbjct: 7   SIPELVSGENEPPVHHLLVDDEDRNETYFPINLTDTSMEIPAINLDDTFDFETMYTTGDA 66

Query: 62  GSLQAHNVAN------------------DEMQVFEEMSDHADTMHXXXXXXXXXXXXXXI 103
           GSLQAHNVAN                  DEMQVFEEMSD ADTMH              I
Sbjct: 67  GSLQAHNVANDEMQVFEANDEMQIFEGDDEMQVFEEMSDRADTMHTSVATGATTATANTI 126

Query: 104 SSEDSGTDDSEAQSTPSQDIPCA 126
           SSED+GTDDSEAQS PSQDIPC+
Sbjct: 127 SSEDTGTDDSEAQSAPSQDIPCS 149



>Os09g0105100 
          Length = 648

 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/141 (53%), Positives = 81/141 (57%), Gaps = 39/141 (27%)

Query: 2   NIPELVSGENEPPVHHLLVDDEDKSETYFPINPTDTRMEIPTINLDDTFDYENMYTAGDA 61
           +IPELVSGENEPPVHHLLVDDED++              IP INLD TFD+E MYT+GD 
Sbjct: 7   SIPELVSGENEPPVHHLLVDDEDRTWM------------IPAINLDYTFDFETMYTSGDV 54

Query: 62  GSLQAHNVAND---------------------------EMQVFEEMSDHADTMHXXXXXX 94
           GSLQAHNVAND                           EMQVFEEMSDHADTMH      
Sbjct: 55  GSLQAHNVANDEMQVFEANDEMQVFATNDEMQVFEANDEMQVFEEMSDHADTMHTSVATG 114

Query: 95  XXXXXXXXISSEDSGTDDSEA 115
                   ISS+DSGTDDSE 
Sbjct: 115 ATTATANTISSQDSGTDDSEV 135



>Os09g0247100 
          Length = 353

 Score =  109 bits (272), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/124 (51%), Positives = 68/124 (54%), Gaps = 36/124 (29%)

Query: 39  MEIPTINLDDTFDYENMYTAGDAGSLQAHNVANDEMQV---------------------- 76
           MEIPTINLD+TFD+E MYTA DAGSL+AHNVANDEMQV                      
Sbjct: 1   MEIPTINLDNTFDFETMYTADDAGSLRAHNVANDEMQVFATNDQMQVFEANDEMQVFATN 60

Query: 77  --------------FEEMSDHADTMHXXXXXXXXXXXXXXISSEDSGTDDSEAQSTPSQD 122
                         FEEMSDHADTMH              ISSE SGTDDSEAQS PSQD
Sbjct: 61  DQMQVFEANDEMQLFEEMSDHADTMHTSVATGATTATANTISSEHSGTDDSEAQSAPSQD 120

Query: 123 IPCA 126
             C+
Sbjct: 121 FLCS 124



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.309    0.127    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,563,867
Number of extensions: 159872
Number of successful extensions: 257
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 6
Length of query: 133
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 43
Effective length of database: 12,336,541
Effective search space: 530471263
Effective search space used: 530471263
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 150 (62.4 bits)