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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0250000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0347) R2 : 0.00646
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.126 (0.0731) R2dN8 : 0.00835 R2N8 : 0.00646
σ : 0.654
deviance : 196.23
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
181.95 0.634 2.88 0.248 0.0415 0.949 0.0123 2.29 -0.0624 20.4 1015 4349 -- --
187.09 0.637 2.86 0.447 0.0426 0.495 0.105 -- -0.0174 19.7 1013 4229 -- --
181.79 0.628 2.89 0.235 0.043 1.31 -- 3.21 -0.0691 18.8 1016 4303 -- --
187.1 0.637 2.86 0.443 0.0459 0.499 -- -- -0.0172 21.2 1013 4206 -- --
181.33 0.627 2.91 0.295 -- 2.3 -- 4.96 -0.0683 -- 1016 4253 -- --
192.34 0.65 2.87 0.377 0.0571 -- 0.103 -- -0.0839 20.2 -- -- -- --
192.37 0.65 2.87 0.374 0.0572 -- -- -- -0.0837 20 -- -- -- --
187.22 0.637 2.86 0.441 -- 0.497 -- -- -0.0191 -- 1013 4215 -- --
191.86 0.645 2.87 -- 0.0459 0.482 -- -- -0.0737 21.7 1013 4114 -- --
192.55 0.648 2.87 0.373 -- -- -- -- -0.0845 -- -- -- -- --
196.06 0.655 2.88 -- 0.0553 -- -- -- -0.125 20.5 -- -- -- --
191.99 0.645 2.87 -- -- 0.48 -- -- -0.0787 -- 1014 4113 -- --
196.23 0.654 2.88 -- -- -- -- -- -0.126 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 172.56 wind 7.0 90 > th dose independent rect. 1 8
3 172.57 wind 7.0 90 > th dose dependent rect. 1 8
9 172.61 wind 7.0 90 > th dose independent rect. 8 1
13 172.61 wind 7.0 90 > th dose dependent rect. 8 1
19 175.84 temperature 25.0 10 < th dose dependent rect. 2 21
23 176.06 temperature 25.0 90 < th dose independent rect. 20 1
34 177.22 temperature 25.0 10 < th dose dependent rect. 13 1
38 177.32 precipitation 0.1 90 > th dose independent rect. 13 1
41 177.32 precipitation 0.1 90 > th dose dependent rect. 13 1
49 177.56 radiation 10.0 10 < th dose dependent rect. 14 1
51 177.57 humidity 50.0 90 > th dose independent rect. 22 22
53 177.63 humidity 50.0 90 < th dose independent sin 13 NA
54 177.68 radiation 10.0 10 < th dose independent rect. 14 1
57 177.82 humidity 50.0 90 < th dose dependent sin 13 NA
58 177.84 humidity 50.0 90 > th dose independent sin 13 NA
60 177.90 temperature 25.0 10 < th dose dependent rect. 9 14
62 177.95 radiation 10.0 30 < th dose independent rect. 12 3
63 177.96 temperature 30.0 10 < th dose dependent rect. 21 2
69 178.01 humidity 50.0 90 < th dose dependent rect. 13 5
96 178.19 humidity 50.0 10 < th dose independent rect. 14 2
101 178.23 humidity 50.0 10 < th dose independent rect. 14 4
131 178.36 humidity 50.0 10 < th dose dependent rect. 14 4
156 178.49 humidity 90.0 10 < th dose dependent rect. 3 2
157 178.50 humidity 80.0 90 < th dose independent rect. 2 2
158 178.50 humidity 80.0 90 < th dose dependent rect. 2 2
167 178.60 wind 7.0 1440 < th dose independent rect. 24 9
169 178.63 humidity 80.0 10 < th dose independent rect. 3 1
212 178.87 humidity 50.0 90 < th dose independent rect. 13 5
233 178.91 wind 1.0 30 < th dose independent rect. 15 1
236 178.91 wind 1.0 30 < th dose dependent rect. 15 1
239 178.92 wind 7.0 1440 > th dose independent rect. 24 9
245 179.00 temperature 25.0 10 < th dose independent rect. 13 1
252 179.01 temperature 25.0 10 < th dose independent rect. 21 1
272 179.37 wind 5.0 30 > th dose dependent rect. 21 13
273 179.39 wind 9.0 10 < th dose dependent rect. 12 11
319 179.61 wind 1.0 10 < th dose independent rect. 13 9
414 179.83 radiation 10.0 4320 < th dose dependent rect. 22 2
449 180.00 wind 5.0 30 > th dose dependent rect. 21 1
459 180.04 temperature 25.0 30 < th dose dependent rect. 13 10
492 180.07 atmosphere 995.0 30 > th dose dependent rect. 13 10
535 180.11 temperature 20.0 90 < th dose independent rect. 3 1
554 180.27 humidity 60.0 270 < th dose dependent rect. 12 1
559 180.31 temperature 10.0 1440 > th dose independent rect. 22 2
563 180.31 temperature 30.0 1440 < th dose independent rect. 22 2
567 180.31 humidity 50.0 1440 > th dose independent rect. 22 2
575 180.31 atmosphere 995.0 1440 > th dose independent rect. 22 2
576 180.31 radiation 1.0 1440 < th dose independent rect. 22 2
596 180.31 temperature 10.0 1440 > th dose independent rect. 24 22
604 180.32 wind 9.0 30 < th dose independent rect. 21 2
605 180.32 temperature 10.0 30 > th dose independent rect. 21 2
608 180.32 humidity 50.0 30 > th dose independent rect. 21 2
611 180.32 atmosphere 995.0 30 > th dose independent rect. 21 2
612 180.32 atmosphere 1010.0 30 < th dose independent rect. 21 2
614 180.32 radiation 1.0 30 < th dose independent rect. 21 2
619 180.32 temperature 10.0 30 > th dose independent rect. 23 22
621 180.32 radiation 10.0 30 < th dose dependent rect. 21 2
629 180.35 wind 9.0 1440 < th dose independent rect. 22 2
656 180.38 humidity 50.0 270 < th dose independent rect. 12 1
669 180.42 temperature 20.0 1440 < th dose independent rect. 5 1
689 180.45 wind 5.0 90 > th dose independent rect. 20 1
693 180.48 wind 9.0 30 < th dose independent rect. 23 22
716 180.52 atmosphere 1015.0 4320 > th dose dependent rect. 6 1
748 180.60 temperature 20.0 1440 > th dose independent rect. 5 1
751 180.63 atmosphere 1015.0 4320 < th dose independent rect. 6 1
752 180.63 wind 1.0 10 < th dose dependent rect. 13 9
756 180.66 atmosphere 1015.0 4320 > th dose independent rect. 6 1
797 180.77 wind 5.0 1440 > th dose dependent rect. 23 11
799 180.79 wind 5.0 4320 < th dose independent rect. 20 5
801 180.79 temperature 25.0 10 < th dose dependent rect. 9 6
829 180.93 wind 1.0 30 > th dose dependent rect. 21 2
832 180.94 wind 5.0 4320 > th dose independent rect. 20 5
838 180.94 temperature 25.0 30 < th dose dependent rect. 2 13
839 180.95 wind 5.0 4320 < th dose independent rect. 20 1
843 180.95 temperature 25.0 90 < th dose dependent rect. 2 1
856 180.99 radiation 40.0 10 < th dose independent rect. 12 11
866 181.01 temperature 25.0 30 < th dose dependent rect. 2 16