BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0222400 Os06g0222400|AK063886
         (95 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0222400  Conserved hypothetical protein                      112   7e-26
Os02g0752800  Similar to Dehydration responsive element bind...    66   6e-12

>Os06g0222400 Conserved hypothetical protein
          Length = 95

 Score =  112 bits (279), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 60/82 (73%), Positives = 60/82 (73%)

Query: 14 VSAAAHPDSPKGSAXXXXXXXEGDESAISACSXXXXXXXXXXXXXXXEMANLDFTEAPWD 73
          VSAAAHPDSPKGSA       EGDESAISACS               EMANLDFTEAPWD
Sbjct: 14 VSAAAHPDSPKGSASTTTTTSEGDESAISACSPPLPPPPPPPPAALPEMANLDFTEAPWD 73

Query: 74 ESDAFHLYKCPSWEIDWDSILS 95
          ESDAFHLYKCPSWEIDWDSILS
Sbjct: 74 ESDAFHLYKCPSWEIDWDSILS 95



>Os02g0752800 Similar to Dehydration responsive element binding protein 2B
           (DREB2B protein)
          Length = 338

 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/35 (82%), Positives = 30/35 (85%)

Query: 61  EMANLDFTEAPWDESDAFHLYKCPSWEIDWDSILS 95
           EM  LDFTEAPWDES+ FHL K PSWEIDWDSILS
Sbjct: 304 EMEKLDFTEAPWDESETFHLRKYPSWEIDWDSILS 338



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.125    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,287,945
Number of extensions: 47763
Number of successful extensions: 42
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 2
Length of query: 95
Length of database: 17,035,801
Length adjustment: 64
Effective length of query: 31
Effective length of database: 13,694,105
Effective search space: 424517255
Effective search space used: 424517255
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 149 (62.0 bits)