BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0214900 Os06g0214900|AK064752
         (548 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0214900  Pyridine nucleotide-disulphide oxidoreductase,...  1028   0.0  

>Os06g0214900 Pyridine nucleotide-disulphide oxidoreductase, class I family
           protein
          Length = 548

 Score = 1028 bits (2657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/548 (96%), Positives = 528/548 (96%)

Query: 1   MSCRAAPWXXXXXXXXXXXXXXXXXXXXFGGLNVWRNSILNNSWRLGGTPMKFGLPSRLF 60
           MSCRAAPW                    FGGLNVWRNSILNNSWRLGGTPMKFGLPSRLF
Sbjct: 1   MSCRAAPWGRPSLPGGRPSPGSARQRGPFGGLNVWRNSILNNSWRLGGTPMKFGLPSRLF 60

Query: 61  RLMASSSSGDGGFSRPSSTDEGPMPIYSWPDKQRPRVCILGGGFGGLYTALRLESLVWPN 120
           RLMASSSSGDGGFSRPSSTDEGPMPIYSWPDKQRPRVCILGGGFGGLYTALRLESLVWPN
Sbjct: 61  RLMASSSSGDGGFSRPSSTDEGPMPIYSWPDKQRPRVCILGGGFGGLYTALRLESLVWPN 120

Query: 121 DKKPQVMLVDQSDRFVFKPMLYELLSGEVDVWEIAPSFTELLKNTSVQFVKDSVKLLRPS 180
           DKKPQVMLVDQSDRFVFKPMLYELLSGEVDVWEIAPSFTELLKNTSVQFVKDSVKLLRPS
Sbjct: 121 DKKPQVMLVDQSDRFVFKPMLYELLSGEVDVWEIAPSFTELLKNTSVQFVKDSVKLLRPS 180

Query: 181 DHFRRDSGGSCTGGVVHLESGTVIEYDWLVLALGAEAKIDVVPGSAEYAIPFTTLDDALK 240
           DHFRRDSGGSCTGGVVHLESGTVIEYDWLVLALGAEAKIDVVPGSAEYAIPFTTLDDALK
Sbjct: 181 DHFRRDSGGSCTGGVVHLESGTVIEYDWLVLALGAEAKIDVVPGSAEYAIPFTTLDDALK 240

Query: 241 VESQLKMLERRRFGKNSPDIQVAIVGLGYSGVELAATISERLKNKGIVQAINVQTTICPS 300
           VESQLKMLERRRFGKNSPDIQVAIVGLGYSGVELAATISERLKNKGIVQAINVQTTICPS
Sbjct: 241 VESQLKMLERRRFGKNSPDIQVAIVGLGYSGVELAATISERLKNKGIVQAINVQTTICPS 300

Query: 301 APPGNRDAALKVLESRNIQLFLGYFVNCIREASASEDSSSMVTDAKEVNGDHKKLLLELQ 360
           APPGNRDAALKVLESRNIQLFLGYFVNCIREASASEDSSSMVTDAKEVNGDHKKLLLELQ
Sbjct: 301 APPGNRDAALKVLESRNIQLFLGYFVNCIREASASEDSSSMVTDAKEVNGDHKKLLLELQ 360

Query: 361 PAQRGIQSQVLEADMVLWTVGSTSQIPRLQPPDAPYVIPLNGRGQVETEETLQVKGHPRT 420
           PAQRGIQSQVLEADMVLWTVGSTSQIPRLQPPDAPYVIPLNGRGQVETEETLQVKGHPRT
Sbjct: 361 PAQRGIQSQVLEADMVLWTVGSTSQIPRLQPPDAPYVIPLNGRGQVETEETLQVKGHPRT 420

Query: 421 FAIGDSAALRDPSGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGR 480
           FAIGDSAALRDPSGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGR
Sbjct: 421 FAIGDSAALRDPSGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGR 480

Query: 481 SDAAITASFIEGLTLEGPLGHAARKIVYCLRMPTDEHRVKVGISWFTKTAVDSLASLQNA 540
           SDAAITASFIEGLTLEGPLGHAARKIVYCLRMPTDEHRVKVGISWFTKTAVDSLASLQNA
Sbjct: 481 SDAAITASFIEGLTLEGPLGHAARKIVYCLRMPTDEHRVKVGISWFTKTAVDSLASLQNA 540

Query: 541 VSSMLTSP 548
           VSSMLTSP
Sbjct: 541 VSSMLTSP 548



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,837,414
Number of extensions: 830740
Number of successful extensions: 1996
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1996
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 442
Effective length of database: 11,501,117
Effective search space: 5083493714
Effective search space used: 5083493714
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)