BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0199800 Os06g0199800|AK111880
         (321 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0199800  cAMP-type GPCR family protein                       612   e-175

>Os06g0199800 cAMP-type GPCR family protein
          Length = 321

 Score =  612 bits (1577), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 296/307 (96%), Positives = 296/307 (96%)

Query: 15  LRDRDVLDAVGTXXXXXXXXXXXFIVLCYLLFRELRKFSFKLVYFLAVSDMFCSLFTIMG 74
           LRDRDVLDAVGT           FIVLCYLLFRELRKFSFKLVYFLAVSDMFCSLFTIMG
Sbjct: 15  LRDRDVLDAVGTSAAALSLAGSSFIVLCYLLFRELRKFSFKLVYFLAVSDMFCSLFTIMG 74

Query: 75  GPSNAFYCFAHDYSAHFFCVASFLWTTTIAFTLHRTVVKHKTDVEEFGSIFHLYVWGTSL 134
           GPSNAFYCFAHDYSAHFFCVASFLWTTTIAFTLHRTVVKHKTDVEEFGSIFHLYVWGTSL
Sbjct: 75  GPSNAFYCFAHDYSAHFFCVASFLWTTTIAFTLHRTVVKHKTDVEEFGSIFHLYVWGTSL 134

Query: 135 ATTVLRSIGSDYGRPGTWCWIQQGSMGKVLHLVTFYLPLWGAILYNGYTYFQVNRMINNA 194
           ATTVLRSIGSDYGRPGTWCWIQQGSMGKVLHLVTFYLPLWGAILYNGYTYFQVNRMINNA
Sbjct: 135 ATTVLRSIGSDYGRPGTWCWIQQGSMGKVLHLVTFYLPLWGAILYNGYTYFQVNRMINNA 194

Query: 195 TRMAVGISDRSIQSDVRADKKAFNRWGYYPLILIGSWAFATINRVHDFANPGHKIFWLSI 254
           TRMAVGISDRSIQSDVRADKKAFNRWGYYPLILIGSWAFATINRVHDFANPGHKIFWLSI
Sbjct: 195 TRMAVGISDRSIQSDVRADKKAFNRWGYYPLILIGSWAFATINRVHDFANPGHKIFWLSI 254

Query: 255 LDVGFAGLMGLFNSIAYGLNSSVRRAIAERLDMYLPERFKRSLPTLTRFKSQQENELTSL 314
           LDVGFAGLMGLFNSIAYGLNSSVRRAIAERLDMYLPERFKRSLPTLTRFKSQQENELTSL
Sbjct: 255 LDVGFAGLMGLFNSIAYGLNSSVRRAIAERLDMYLPERFKRSLPTLTRFKSQQENELTSL 314

Query: 315 IVDASNT 321
           IVDASNT
Sbjct: 315 IVDASNT 321



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.329    0.140    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,199,942
Number of extensions: 345967
Number of successful extensions: 712
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 712
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 220
Effective length of database: 11,762,187
Effective search space: 2587681140
Effective search space used: 2587681140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 156 (64.7 bits)