BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0196500 Os06g0196500|Os06g0196500
(634 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0196500 Conserved hypothetical protein 609 e-174
>Os06g0196500 Conserved hypothetical protein
Length = 634
Score = 609 bits (1571), Expect = e-174, Method: Compositional matrix adjust.
Identities = 310/396 (78%), Positives = 310/396 (78%)
Query: 239 HDGDAGDRPKQQPEXXXXXXXXXXXXXXXXXRSCQSQQQVVLAEIKAAAAFRLRRSGNGA 298
HDGDAGDRPKQQPE RSCQSQQQVVLAEIKAAAAFRLRRSGNGA
Sbjct: 239 HDGDAGDRPKQQPEPVHAATTTADDAVAPAARSCQSQQQVVLAEIKAAAAFRLRRSGNGA 298
Query: 299 AQGRQPAASPRPVITRQLDGRRKPSDRNSDVEAKNFNLXXXXXXXXXXXTAQSSVEIGSL 358
AQGRQPAASPRPVITRQLDGRRKPSDRNSDVEAKNFNL TAQSSVEIGSL
Sbjct: 299 AQGRQPAASPRPVITRQLDGRRKPSDRNSDVEAKNFNLDEGIGEDDDDDTAQSSVEIGSL 358
Query: 359 KITGDSDTEPSYVYITKDIDDEAMNTSQPQPLAASDSNAEEPESLAPHQSEKETRHLXXX 418
KITGDSDTEPSYVYITKDIDDEAMNTSQPQPLAASDSNAEEPESLAPHQSEKETRHL
Sbjct: 359 KITGDSDTEPSYVYITKDIDDEAMNTSQPQPLAASDSNAEEPESLAPHQSEKETRHLEET 418
Query: 419 XXXXXXXXXXXXRPATDREDDSPQSSDQSFYSNVDSSFSHRSELELAASATDSPLHGSPS 478
RPATDREDDSPQSSDQSFYSNVDSSFSHRSELELAASATDSPLHGSPS
Sbjct: 419 AMAASSEATAKERPATDREDDSPQSSDQSFYSNVDSSFSHRSELELAASATDSPLHGSPS 478
Query: 479 STGPSTEQLLEADAAMLRKKRXXXXXXXXXXXXXXXINSLLIPXXXXXXXXXVACPVTVQ 538
STGPSTEQLLEADAAMLRKKR INSLLIP VACPVTVQ
Sbjct: 479 STGPSTEQLLEADAAMLRKKREEEEEEEEDEAAAGEINSLLIPSTTTSSSSSVACPVTVQ 538
Query: 539 SPMEAVAGFKRFLTFGKKNXXXXXXXXXDDSGVGHGWPSGDSGVRQRICXXXXXXXXXXN 598
SPMEAVAGFKRFLTFGKKN DDSGVGHGWPSGDSGVRQRIC N
Sbjct: 539 SPMEAVAGFKRFLTFGKKNAAAAVAPPADDSGVGHGWPSGDSGVRQRICSSDAASDDSDN 598
Query: 599 SYVIPAHGNSVTGLLQFSSNQITSVPIKYSTKGSLI 634
SYVIPAHGNSVTGLLQFSSNQITSVPIKYSTKGSLI
Sbjct: 599 SYVIPAHGNSVTGLLQFSSNQITSVPIKYSTKGSLI 634
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/120 (58%), Positives = 70/120 (58%)
Query: 1 MRGGGGDDDLWAKAAELERQFEGYKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MRGGGGDDDLWAKAAELERQFEGYKR
Sbjct: 1 MRGGGGDDDLWAKAAELERQFEGYKRRVAERRSSSSAAAADRHDGDGDGGAVEVVAVGKG 60
Query: 61 RRYDAYVRRRDEKLRQGWRARMERKEAEMKALWXXXXXXXXXXXXXXXXNGKQQKPGNLE 120
RRYDAYVRRRDEKLRQGWRARMERKEAEMKALW NGKQQKPGNLE
Sbjct: 61 RRYDAYVRRRDEKLRQGWRARMERKEAEMKALWARLDVDRRRDGDLAAGNGKQQKPGNLE 120
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.127 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,793,745
Number of extensions: 449095
Number of successful extensions: 1365
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1363
Number of HSP's successfully gapped: 2
Length of query: 634
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 527
Effective length of database: 11,448,903
Effective search space: 6033571881
Effective search space used: 6033571881
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 159 (65.9 bits)