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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0196500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.31 (0.0328) R2 : 0.445
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.6 (0.0859) R2dC : 0.424 R2C : 0.421
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.265 (0.0689) R2dN8 : 0.0233 R2N8 : 0.0203
σ : 0.618
deviance : 174.38
__
_____
C
peak time of C : 6.16
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
146.4 0.568 4.3 0.541 1.7 0.779 0.267 1.06 0.201 6.34 21.1 660 -- --
148.89 0.568 4.34 0.327 1.7 0.651 -0.15 -- 0.133 6.35 21.67 623 -- --
146.56 0.564 4.31 0.536 1.7 0.774 -- 1.01 0.201 6.35 21.09 659 -- --
148.95 0.568 4.34 0.323 1.7 0.651 -- -- 0.132 6.34 21.7 623 -- --
280.28 0.78 4.33 0.638 -- 0.733 -- 1.15 0.232 -- 21.6 1378 -- --
166.2 0.604 4.3 0.557 1.59 -- -0.136 -- 0.327 6.19 -- -- -- --
166.25 0.604 4.3 0.555 1.59 -- -- -- 0.327 6.18 -- -- -- --
273.98 0.771 4.4 0.305 -- 0.832 -- -- 0.0581 -- 24.58 1343 -- --
151.51 0.573 4.34 -- 1.7 0.712 -- -- 0.103 6.37 21.5 655 -- --
297.49 0.806 4.33 0.6 -- -- -- -- 0.362 -- -- -- -- --
174.38 0.618 4.31 -- 1.6 -- -- -- 0.265 6.16 -- -- -- --
276.23 0.774 4.41 -- -- 0.899 -- -- 0.00816 -- 24.5 1343 -- --
306.97 0.818 4.34 -- -- -- -- -- 0.296 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 134.70 temperature 20.0 270 > th dose dependent rect. 2 5
2 135.48 temperature 20.0 270 > th dose independent rect. 14 17
3 135.71 temperature 20.0 270 > th dose dependent rect. 4 2
22 138.70 radiation 1.0 30 < th dose independent sin 11 NA
28 139.32 radiation 1.0 30 < th dose dependent sin 11 NA
32 139.56 temperature 20.0 270 > th dose independent rect. 2 5
34 139.70 temperature 15.0 10 > th dose dependent rect. 15 18
38 139.89 temperature 10.0 720 > th dose dependent rect. 19 12
45 140.26 radiation 1.0 30 > th dose independent sin 11 NA
47 140.26 temperature 20.0 10 > th dose dependent rect. 2 7
61 140.60 temperature 20.0 10 > th dose dependent rect. 5 4
70 140.99 radiation 1.0 90 > th dose independent rect. 18 13
73 141.05 temperature 20.0 10 > th dose independent rect. 15 18
74 141.05 temperature 10.0 270 > th dose dependent rect. 14 17
77 141.09 temperature 30.0 90 < th dose independent rect. 9 19
86 141.43 wind 3.0 90 < th dose independent rect. 4 5
99 141.61 temperature 10.0 90 > th dose dependent rect. 4 17
107 141.70 temperature 30.0 90 < th dose independent rect. 7 21
126 142.04 wind 5.0 90 < th dose dependent rect. 4 5
132 142.14 temperature 10.0 10 > th dose dependent rect. 5 16
134 142.18 radiation 1.0 30 > th dose independent rect. 17 16
136 142.21 wind 9.0 90 < th dose dependent rect. 4 14
150 142.41 temperature 20.0 10 > th dose independent rect. 17 16
156 142.53 temperature 20.0 10 > th dose independent rect. 5 4
160 142.62 radiation 1.0 90 > th dose independent rect. 4 3
170 142.63 temperature 15.0 10 > th dose dependent rect. 17 16
171 142.66 temperature 10.0 270 > th dose dependent rect. 2 16
179 142.73 wind 3.0 10 < th dose independent rect. 5 4
186 142.80 wind 5.0 10 < th dose dependent rect. 5 4
198 142.96 radiation 1.0 30 > th dose independent rect. 15 16
214 143.09 temperature 20.0 720 > th dose dependent rect. 19 12
219 143.13 temperature 20.0 10 > th dose dependent rect. 23 10
222 143.16 radiation 1.0 30 > th dose dependent rect. 18 13
223 143.18 temperature 10.0 720 > th dose dependent rect. 19 6
237 143.37 radiation 20.0 90 < th dose independent rect. 4 5
270 143.60 humidity 70.0 90 > th dose independent rect. 4 5
288 143.74 humidity 60.0 270 > th dose independent rect. 7 19
293 143.77 radiation 1.0 30 > th dose dependent rect. 5 2
310 143.84 radiation 1.0 30 > th dose independent rect. 15 18
314 143.85 humidity 80.0 270 > th dose independent rect. 2 5
318 143.88 precipitation 0.1 270 < th dose independent rect. 18 9
319 143.88 precipitation 0.1 270 < th dose dependent rect. 18 9
330 144.01 humidity 50.0 90 > th dose dependent rect. 4 5
333 144.03 temperature 30.0 90 < th dose independent rect. 18 10
339 144.08 wind 7.0 90 < th dose independent rect. 19 9
359 144.12 temperature 10.0 270 > th dose dependent rect. 11 22
363 144.16 precipitation 0.1 90 < th dose independent rect. 9 19
364 144.16 precipitation 0.1 90 < th dose dependent rect. 9 19
384 144.33 wind 3.0 30 < th dose dependent rect. 5 2
402 144.42 humidity 60.0 90 > th dose independent rect. 18 10
405 144.44 radiation 1.0 90 < th dose dependent rect. 18 10
463 144.66 precipitation 0.1 90 < th dose independent rect. 7 21
465 144.66 precipitation 0.1 90 < th dose dependent rect. 7 21
473 144.70 temperature 10.0 270 > th dose dependent rect. 2 19
478 144.75 humidity 60.0 90 > th dose independent rect. 9 19
483 144.78 temperature 15.0 90 > th dose independent rect. 4 15
502 144.83 radiation 1.0 90 < th dose dependent rect. 5 23
514 144.92 radiation 1.0 90 < th dose independent rect. 18 10
524 144.97 temperature 30.0 720 < th dose dependent rect. 21 7
527 144.98 radiation 10.0 270 < th dose independent rect. 4 2
551 145.07 temperature 25.0 10 > th dose independent rect. 1 8
565 145.13 radiation 30.0 10 < th dose independent rect. 5 4
573 145.17 temperature 10.0 90 > th dose independent rect. 19 9
577 145.17 atmosphere 995.0 90 > th dose independent rect. 19 9
584 145.17 atmosphere 1015.0 90 < th dose independent rect. 4 15
617 145.27 humidity 60.0 270 > th dose dependent rect. 2 5
618 145.28 precipitation 0.1 270 < th dose independent rect. 3 15
620 145.28 precipitation 0.1 270 < th dose dependent rect. 3 15
636 145.36 radiation 20.0 90 < th dose independent rect. 4 14
667 145.50 atmosphere 995.0 90 > th dose independent rect. 9 19
670 145.52 wind 9.0 90 < th dose independent rect. 4 15
678 145.55 wind 9.0 270 < th dose dependent rect. 2 5
692 145.63 wind 9.0 90 < th dose independent rect. 9 19
709 145.67 wind 5.0 90 < th dose independent rect. 4 14
717 145.69 precipitation 0.1 90 < th dose independent rect. 4 5
720 145.69 precipitation 0.1 90 < th dose dependent rect. 4 5
753 145.79 radiation 40.0 90 < th dose dependent rect. 4 5
763 145.83 atmosphere 995.0 90 > th dose independent rect. 7 21
774 145.88 temperature 10.0 90 > th dose independent rect. 4 5
776 145.88 humidity 50.0 90 > th dose independent rect. 4 5
777 145.88 atmosphere 995.0 90 > th dose independent rect. 4 5
778 145.88 atmosphere 1015.0 90 < th dose independent rect. 4 5
779 145.88 temperature 10.0 90 > th dose independent rect. 9 19
786 145.93 radiation 20.0 90 < th dose independent rect. 4 7
797 145.98 wind 5.0 270 < th dose independent rect. 2 5
804 146.02 precipitation 0.1 270 < th dose independent rect. 4 2
806 146.02 precipitation 0.1 270 < th dose dependent rect. 4 2
813 146.06 wind 9.0 270 < th dose independent rect. 6 22
814 146.07 precipitation 0.1 270 < th dose independent rect. 2 5
816 146.07 precipitation 0.1 270 < th dose dependent rect. 2 5
842 146.17 radiation 40.0 90 < th dose dependent rect. 4 14
847 146.18 temperature 30.0 10 < th dose dependent rect. 18 11
860 146.22 temperature 30.0 90 < th dose independent rect. 11 17
861 146.22 wind 9.0 90 < th dose dependent rect. 19 9
875 146.26 temperature 10.0 90 > th dose independent rect. 4 3
877 146.26 temperature 30.0 90 < th dose independent rect. 4 3
878 146.26 humidity 50.0 90 > th dose independent rect. 4 3
880 146.26 atmosphere 995.0 90 > th dose independent rect. 4 3
881 146.26 atmosphere 1015.0 90 < th dose independent rect. 4 3
885 146.26 temperature 10.0 90 > th dose independent rect. 7 21
886 146.26 temperature 10.0 720 > th dose dependent sin 12 NA
890 146.29 temperature 10.0 1440 > th dose independent rect. 5 5
893 146.29 atmosphere 995.0 1440 > th dose independent rect. 5 5
894 146.29 atmosphere 1015.0 1440 < th dose independent rect. 5 5
895 146.29 temperature 10.0 1440 > th dose independent rect. 10 19
907 146.32 temperature 30.0 90 < th dose independent rect. 4 5
930 146.35 wind 9.0 270 < th dose independent rect. 7 19
931 146.35 radiation 1.0 90 < th dose independent rect. 5 23
985 146.48 wind 9.0 1440 < th dose independent rect. 5 5
986 146.48 temperature 10.0 270 > th dose independent rect. 7 7
987 146.48 atmosphere 995.0 270 > th dose independent rect. 7 7
988 146.48 atmosphere 1015.0 270 < th dose independent rect. 7 7
989 146.48 temperature 10.0 270 > th dose independent rect. 14 17
991 146.49 wind 9.0 270 < th dose independent rect. 7 7
992 146.49 radiation 40.0 270 < th dose dependent rect. 4 2