BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0187000 Os06g0187000|AB037135
(812 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0187000 Similar to Origin recognition complex 1 1337 0.0
Os01g0856000 Similar to CDC6 protein 135 1e-31
>Os06g0187000 Similar to Origin recognition complex 1
Length = 812
Score = 1337 bits (3461), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 664/812 (81%), Positives = 664/812 (81%)
Query: 1 MDLSATPSRSKSGLRSSPRKPVAAPAVAQMDLXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MDLSATPSRSKSGLRSSPRKPVAAPAVAQMDL
Sbjct: 1 MDLSATPSRSKSGLRSSPRKPVAAPAVAQMDLSTPSKPTPRRKPKAPPVAAPMSPVTPSS 60
Query: 61 XXXXXXLLXXXXXXXXXXXXXXXXXXXXXXXXXSPSPKTPTQSEXXXXXXXXXXXXXXXX 120
LL SPSPKTPTQSE
Sbjct: 61 VRRSSRLLETPTKVTSETPVKPTPTPKRKRAAPSPSPKTPTQSEPKRQRQRQRQQPKKPK 120
Query: 121 XXAYYRKVVYDGGEFAAGDDVYVKRRXXXXXXXXXXXXXXCRVCFRAGAAVMVECDVCLG 180
AYYRKVVYDGGEFAAGDDVYVKRR CRVCFRAGAAVMVECDVCLG
Sbjct: 121 KRAYYRKVVYDGGEFAAGDDVYVKRRDGAESDAEDPEAEECRVCFRAGAAVMVECDVCLG 180
Query: 181 GFHXXXXXXXXXXXXEGDWACPYCEAERAGKAIERPKPPEGKRIVRTAKEKLLSSDLWAA 240
GFH EGDWACPYCEAERAGKAIERPKPPEGKRIVRTAKEKLLSSDLWAA
Sbjct: 181 GFHLRCVRPPLRRVPEGDWACPYCEAERAGKAIERPKPPEGKRIVRTAKEKLLSSDLWAA 240
Query: 241 RIESLWREPDGIFWAKVRWYIIPEETAAGRQPHNLRRELYRTNDLADIEMETILRHCYVM 300
RIESLWREPDGIFWAKVRWYIIPEETAAGRQPHNLRRELYRTNDLADIEMETILRHCYVM
Sbjct: 241 RIESLWREPDGIFWAKVRWYIIPEETAAGRQPHNLRRELYRTNDLADIEMETILRHCYVM 300
Query: 301 SPKEFKDASDQGDDVFYCEYEYDIHWHNFKRLADIDDEPETKEDPGDEPYNAGNXXXXXX 360
SPKEFKDASDQGDDVFYCEYEYDIHWHNFKRLADIDDEPETKEDPGDEPYNAGN
Sbjct: 301 SPKEFKDASDQGDDVFYCEYEYDIHWHNFKRLADIDDEPETKEDPGDEPYNAGNDYVSDS 360
Query: 361 XXXXXXXXXXXPTKCSSARTHQSHALAANLRKGRTYGLQKIGIRKIPEHVRCHQXXXXXX 420
PTKCSSARTHQSHALAANLRKGRTYGLQKIGIRKIPEHVRCHQ
Sbjct: 361 DEDSEYDEEEEPTKCSSARTHQSHALAANLRKGRTYGLQKIGIRKIPEHVRCHQKTNLEK 420
Query: 421 XXXXXXXXXXPKSLPCRDKEMEEISAFVKDAICNDQCLGRCLYIHGVPGTGKTMSVLAVM 480
PKSLPCRDKEMEEISAFVKDAICNDQCLGRCLYIHGVPGTGKTMSVLAVM
Sbjct: 421 AKATLLLATLPKSLPCRDKEMEEISAFVKDAICNDQCLGRCLYIHGVPGTGKTMSVLAVM 480
Query: 481 RRLRSELDSGNLRPYSFIEINGLKLASPENIYKVIYEQLSGHRVGWKKALHYLTEHFSGG 540
RRLRSELDSGNLRPYSFIEINGLKLASPENIYKVIYEQLSGHRVGWKKALHYLTEHFSGG
Sbjct: 481 RRLRSELDSGNLRPYSFIEINGLKLASPENIYKVIYEQLSGHRVGWKKALHYLTEHFSGG 540
Query: 541 TKIGKQANQPXXXXXXXXXXXXTRNQSVLYNILDWPTRPNSNLVVIGIANTMDLPEKLLP 600
TKIGKQANQP TRNQSVLYNILDWPTRPNSNLVVIGIANTMDLPEKLLP
Sbjct: 541 TKIGKQANQPIILLIDELDLLLTRNQSVLYNILDWPTRPNSNLVVIGIANTMDLPEKLLP 600
Query: 601 RISSRMGIQRLCFGPYNYRQLQEIITSRLKGIDAFEDQAIEFASRKVAAMSGDARRALEI 660
RISSRMGIQRLCFGPYNYRQLQEIITSRLKGIDAFEDQAIEFASRKVAAMSGDARRALEI
Sbjct: 601 RISSRMGIQRLCFGPYNYRQLQEIITSRLKGIDAFEDQAIEFASRKVAAMSGDARRALEI 660
Query: 661 CRRAAEFADYRVKQSGHTSVNRGKNVVCMGDIEAAIQEVFQAPHIQVMKNCPKFGKIILV 720
CRRAAEFADYRVKQSGHTSVNRGKNVVCMGDIEAAIQEVFQAPHIQVMKNCPKFGKIILV
Sbjct: 661 CRRAAEFADYRVKQSGHTSVNRGKNVVCMGDIEAAIQEVFQAPHIQVMKNCPKFGKIILV 720
Query: 721 AMVHELYRSGLGEVMFDKLAATVLSWCHVNRELLPGYDTLLKICCKLGEGKIILCEEGTK 780
AMVHELYRSGLGEVMFDKLAATVLSWCHVNRELLPGYDTLLKICCKLGEGKIILCEEGTK
Sbjct: 721 AMVHELYRSGLGEVMFDKLAATVLSWCHVNRELLPGYDTLLKICCKLGEGKIILCEEGTK 780
Query: 781 HKLQKLQLNYPSDDVTFALKESPDIPWLSKYL 812
HKLQKLQLNYPSDDVTFALKESPDIPWLSKYL
Sbjct: 781 HKLQKLQLNYPSDDVTFALKESPDIPWLSKYL 812
>Os01g0856000 Similar to CDC6 protein
Length = 440
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 173/374 (46%), Gaps = 18/374 (4%)
Query: 434 LPCRDKEMEEISAFVKDAICNDQCLGRCLYIHGVPGTGKTMSVLAVMRRLRSELDSGNLR 493
L CRD E + F K C +Q LY+ G PGTGKT+S+ V + D +
Sbjct: 64 LVCRDDEQSRVLEFCKG--CVEQERSGSLYVCGCPGTGKTLSINKVKESVARWADETGME 121
Query: 494 PYSFIEINGLKLASPENIYKVIYEQLSGHRVGWKKALHYLTEHFSGGTKIGKQANQPXXX 553
+ IN LA I+ I + KKA L+ T + + P
Sbjct: 122 TPDALSINCTSLAKTHEIFSKILAKFQTR----KKATCKLSPLQQLQTMFSHKESAPRRM 177
Query: 554 XXXXXXXX---XTRNQSVLYNILDWPTRPNSNLVVIGIANTMDLPEKLLPRISSRMGIQR 610
TR+++VL+++ T S ++IGIAN +DL ++ LP++ S + +
Sbjct: 178 LLVVVDEMDYLITRDRAVLHDLFMLTTYQFSRCILIGIANAIDLADRFLPKLES-LNCKP 236
Query: 611 LC--FGPYNYRQLQEIITSRLKGI--DAFEDQAIEFASRKVAAMSGDARRALEICRRAAE 666
L F Y+ Q+ +II RLK + D FE A+EF +RKVAA SGD R+AL +CR A E
Sbjct: 237 LVVTFRAYSKDQISDIIKHRLKVLEYDVFEPLALEFCARKVAAASGDMRKALGVCRSAVE 296
Query: 667 FADYRVKQSGHTSVNRGKNVVCMGDIEAAIQEVFQAPHIQVMKNCPKFGKIILVAMVHEL 726
+ R+++S ++ +V ++ A+ + F++P + + P+ +++L A+ +
Sbjct: 297 VFEARLQESS----DQEFGLVTFDHMDIALSKAFKSPVVDSILCLPQHQQMVLCALANTF 352
Query: 727 YRSGLGEVMFDKLAATVLSWCHVNRELLPGYDTLLKICCKLGEGKIILCEEGTKHKLQKL 786
+ +L + + C + G +C L + + + + KL+++
Sbjct: 353 HHCKKKATTLGELNKSYIEICRSTQVPAVGMLEFSNMCMVLSDQGFMKLGQSKEDKLRRV 412
Query: 787 QLNYPSDDVTFALK 800
L S D+TFA K
Sbjct: 413 MLQIDSSDITFAFK 426
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,881,369
Number of extensions: 920476
Number of successful extensions: 2161
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2156
Number of HSP's successfully gapped: 2
Length of query: 812
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 703
Effective length of database: 11,344,475
Effective search space: 7975165925
Effective search space used: 7975165925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)