Os06g0187000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Origin recognition complex 1.
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Os06g0187000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Origin recognition complex 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.77 | 0.563 | 3.82 | 0.887 | 0.557 | -1.75 | -0.226 | 1.33 | 0.568 | 21 | 25.8 | 1363 | -- | -- |
| 146.38 | 0.563 | 3.86 | 0.651 | 0.542 | -1.65 | -0.184 | -- | 0.467 | 20.4 | 25.89 | 1432 | -- | -- |
| 143.87 | 0.559 | 3.82 | 0.89 | 0.566 | -1.76 | -- | 1.32 | 0.568 | 21.1 | 25.8 | 1346 | -- | -- |
| 145.09 | 0.561 | 3.87 | 0.505 | 0.58 | -1.71 | -- | -- | 0.449 | 21.2 | 25.8 | 1306 | -- | -- |
| 161.26 | 0.591 | 3.81 | 0.884 | -- | -1.67 | -- | 1.28 | 0.553 | -- | 25.9 | 1408 | -- | -- |
| 225.49 | 0.704 | 3.99 | -0.0498 | 0.552 | -- | -0.0592 | -- | -0.0837 | 19.7 | -- | -- | -- | -- |
| 225.5 | 0.703 | 3.99 | -0.0482 | 0.553 | -- | -- | -- | -0.0837 | 19.7 | -- | -- | -- | -- |
| 162.07 | 0.593 | 3.84 | 0.478 | -- | -1.6 | -- | -- | 0.475 | -- | 25.54 | 1414 | -- | -- |
| 150.77 | 0.572 | 3.88 | -- | 0.569 | -1.59 | -- | -- | 0.403 | 21.4 | 25.7 | 1307 | -- | -- |
| 241.93 | 0.727 | 3.97 | -0.0556 | -- | -- | -- | -- | -0.0919 | -- | -- | -- | -- | -- |
| 225.56 | 0.703 | 3.98 | -- | 0.553 | -- | -- | -- | -0.0783 | 19.7 | -- | -- | -- | -- |
| 167.32 | 0.602 | 3.86 | -- | -- | -1.47 | -- | -- | 0.384 | -- | 25.52 | 1397 | -- | -- |
| 242.01 | 0.726 | 3.97 | -- | -- | -- | -- | -- | -0.0857 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 143.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 15 |
| 2 | 143.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 13 |
| 13 | 144.08 | temperature | 20 | 1440 | > th | dose dependent | sin | 5 | NA |
| 46 | 145.09 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 52 | 145.20 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 60 | 145.31 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 127 | 146.17 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 145 | 146.31 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 155 | 146.39 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 7 |
| 169 | 146.51 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 7 |
| 190 | 146.69 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 201 | 146.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 210 | 146.83 | temperature | 20 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 219 | 146.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 225 | 146.87 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 4 |
| 243 | 146.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 300 | 147.26 | temperature | 25 | 1440 | > th | dose independent | rect. | 1 | 22 |
| 341 | 147.46 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 485 | 148.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 9 |
| 606 | 148.34 | temperature | 25 | 4320 | > th | dose independent | sin | 3 | NA |
| 621 | 148.37 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 19 |
| 679 | 148.49 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 691 | 148.53 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 16 |
| 732 | 148.60 | temperature | 30 | 1440 | < th | dose dependent | sin | 4 | NA |
| 740 | 148.62 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 759 | 148.66 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 21 |
| 768 | 148.68 | temperature | 25 | 4320 | < th | dose independent | sin | 3 | NA |
| 872 | 148.84 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 952 | 148.96 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 12 |