BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0168000 Os06g0168000|AK099356
         (337 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0168000  Glutathione S-transferase, C-terminal-like dom...   570   e-163

>Os06g0168000 Glutathione S-transferase, C-terminal-like domain containing
           protein
          Length = 337

 Score =  570 bits (1468), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 286/321 (89%), Positives = 286/321 (89%)

Query: 17  RKVLVARKAAFGLPTACPTCLPVLLYLRMCNVPFDIHVDSSFPDADHIPYVEFGECVAFN 76
           RKVLVARKAAFGLPTACPTCLPVLLYLRMCNVPFDIHVDSSFPDADHIPYVEFGECVAFN
Sbjct: 17  RKVLVARKAAFGLPTACPTCLPVLLYLRMCNVPFDIHVDSSFPDADHIPYVEFGECVAFN 76

Query: 77  NEKGGVIEYLKEEKIVDLNSKHPSVSYSDVLSTKAMVMTWLSDALQYELWLASDGSIPHD 136
           NEKGGVIEYLKEEKIVDLNSKHPSVSYSDVLSTKAMVMTWLSDALQYELWLASDGSIPHD
Sbjct: 77  NEKGGVIEYLKEEKIVDLNSKHPSVSYSDVLSTKAMVMTWLSDALQYELWLASDGSIPHD 136

Query: 137 IYFSDLSWPIGKILYWKKTREVKQQLGITKLNAAEKEEEIYQKANAAYDALSTRLGDQIF 196
           IYFSDLSWPIGKILYWKKTREVKQQLGITKLNAAEKEEEIYQKANAAYDALSTRLGDQIF
Sbjct: 137 IYFSDLSWPIGKILYWKKTREVKQQLGITKLNAAEKEEEIYQKANAAYDALSTRLGDQIF 196

Query: 197 LFDNSPTDVDALFLGHALFVLNVLPDTSVLRSCLQKYDNLVNFTKHLKVQLLEADSDSSA 256
           LFDNSPTDVDALFLGHALFVLNVLPDTSVLRSCLQKYDNLVNFTKHLKVQLLEADSDSSA
Sbjct: 197 LFDNSPTDVDALFLGHALFVLNVLPDTSVLRSCLQKYDNLVNFTKHLKVQLLEADSDSSA 256

Query: 257 TGLGSTDXXXXXXXXXXXXXGRSYXXXXXXXXXXXXXXXXXXXXXXYFLATQLVAVLLFL 316
           TGLGSTD             GRSY                      YFLATQLVAVLLFL
Sbjct: 257 TGLGSTDPSSSSTPRKRASSGRSYKPKPRAKKERTEEEKKFRRKAKYFLATQLVAVLLFL 316

Query: 317 SLMGGADSSELDDEDGVDYED 337
           SLMGGADSSELDDEDGVDYED
Sbjct: 317 SLMGGADSSELDDEDGVDYED 337



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,595,284
Number of extensions: 358580
Number of successful extensions: 790
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 789
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 236
Effective length of database: 11,762,187
Effective search space: 2775876132
Effective search space used: 2775876132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)