BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0167000 Os06g0167000|AK099780
(1130 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0167000 Similar to PRP8 protein (Fragment) 2334 0.0
Os05g0163200 Mov34/MPN/PAD-1 family protein 285 2e-76
>Os06g0167000 Similar to PRP8 protein (Fragment)
Length = 1130
Score = 2334 bits (6049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1118/1130 (98%), Positives = 1118/1130 (98%)
Query: 1 FSNTKDGVWNLQNEQTKERTAIAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNT 60
FSNTKDGVWNLQNEQTKERTAIAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNT
Sbjct: 1 FSNTKDGVWNLQNEQTKERTAIAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNT 60
Query: 61 ALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGL 120
ALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGL
Sbjct: 61 ALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGL 120
Query: 121 GMLSMGHILIPQSDLRYSKQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRV 180
GMLSMGHILIPQSDLRYSKQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRV
Sbjct: 121 GMLSMGHILIPQSDLRYSKQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRV 180
Query: 181 WAEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQY 240
WAEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQY
Sbjct: 181 WAEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQY 240
Query: 241 QVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 300
QVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEK
Sbjct: 241 QVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 300
Query: 301 ASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGK 360
ASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGK
Sbjct: 301 ASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGK 360
Query: 361 IPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSS 420
IPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSS
Sbjct: 361 IPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSS 420
Query: 421 CADILLFAAHRWQMSKPSLVSESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFM 480
CADILLFAAHRWQMSKPSLVSESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFM
Sbjct: 421 CADILLFAAHRWQMSKPSLVSESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFM 480
Query: 481 DYTTDNMSIYPSPTGVMIGIDLAYNLHSAFGNWFPGSKPLLQQAMNKIMKSNPALYVLRE 540
DYTTDNMSIYPSPTGVMIGIDLAYNLHSAFGNWFPGSKPLLQQAMNKIMKSNPALYVLRE
Sbjct: 481 DYTTDNMSIYPSPTGVMIGIDLAYNLHSAFGNWFPGSKPLLQQAMNKIMKSNPALYVLRE 540
Query: 541 RIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPING 600
RIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPING
Sbjct: 541 RIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPING 600
Query: 601 AIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTR 660
AIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTR
Sbjct: 601 AIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTR 660
Query: 661 KGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLYNIYDDWLK 720
KGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLYNIYDDWLK
Sbjct: 661 KGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLYNIYDDWLK 720
Query: 721 SISSFTAFSRIVLILRALHVNNEKAKMLLKPDKTIVTEPHHIWPTLTDEQWLKVECALRD 780
SISSFTAFSRIVLILRALHVNNEKAKMLLKPDKTIVTEPHHIWPTLTDEQWLKVECALRD
Sbjct: 721 SISSFTAFSRIVLILRALHVNNEKAKMLLKPDKTIVTEPHHIWPTLTDEQWLKVECALRD 780
Query: 781 LILSDYAKKNNVNTSALTQSEIRDIILGAEIAPPSQQRQQIAEIEKQSREXXXXXXXXXX 840
LILSDYAKKNNVNTSALTQSEIRDIILGAEIAPPSQQRQQIAEIEKQSRE
Sbjct: 781 LILSDYAKKNNVNTSALTQSEIRDIILGAEIAPPSQQRQQIAEIEKQSRETTQLTAVTTR 840
Query: 841 XXNVHGDELIITTTSPYEQQAFASKTDWRVRAISATNLYLRVNHIYVNSDDIKETGYTYI 900
NVHGDELIITTTSPYEQQAFASKTDWRVRAISATNLYLRVNHIYVNSDDIKETGYTYI
Sbjct: 841 TTNVHGDELIITTTSPYEQQAFASKTDWRVRAISATNLYLRVNHIYVNSDDIKETGYTYI 900
Query: 901 MPKNILKKFICIADLRTQIAGFLYGLSPQDNPQVKEIRCIAIPPQHGTHQMVTLPANLPE 960
MPKNILKKFICIADLRTQIAGFLYGLSPQDNPQVKEIRCIAIPPQHGTHQMVTLPANLPE
Sbjct: 901 MPKNILKKFICIADLRTQIAGFLYGLSPQDNPQVKEIRCIAIPPQHGTHQMVTLPANLPE 960
Query: 961 HEFLNDLEPLGWMHTQPNEAPQLSPQDLTSHAKILENNKQWDGEKCIILTCSFTPGSCSL 1020
HEFLNDLEPLGWMHTQPNEAPQLSPQDLTSHAKILENNKQWDGEKCIILTCSFTPGSCSL
Sbjct: 961 HEFLNDLEPLGWMHTQPNEAPQLSPQDLTSHAKILENNKQWDGEKCIILTCSFTPGSCSL 1020
Query: 1021 TAYKLTPSGYEWGRSNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNTPWNFNFMG 1080
TAYKLTPSGYEWGRSNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNTPWNFNFMG
Sbjct: 1021 TAYKLTPSGYEWGRSNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNTPWNFNFMG 1080
Query: 1081 VKHDPLMKYNMKLGTPRDFYHEDHRPTHFLEFSNIDEGEVAEGDREDTFT 1130
VKHDPLMKYNMKLGTPRDFYHEDHRPTHFLEFSNIDEGEVAEGDREDTFT
Sbjct: 1081 VKHDPLMKYNMKLGTPRDFYHEDHRPTHFLEFSNIDEGEVAEGDREDTFT 1130
>Os05g0163200 Mov34/MPN/PAD-1 family protein
Length = 181
Score = 285 bits (728), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 130/131 (99%), Positives = 131/131 (100%)
Query: 938 RCIAIPPQHGTHQMVTLPANLPEHEFLNDLEPLGWMHTQPNEAPQLSPQDLTSHAKILEN 997
RCIAIPPQHGTHQMVTLPANLPEHEFLNDLEPLGWMHTQPNEAPQLSPQDLTSHAKILEN
Sbjct: 1 RCIAIPPQHGTHQMVTLPANLPEHEFLNDLEPLGWMHTQPNEAPQLSPQDLTSHAKILEN 60
Query: 998 NKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRSNKDTGSNPHGYLPTHYEKVQML 1057
NKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRSNKD+GSNPHGYLPTHYEKVQML
Sbjct: 61 NKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRSNKDSGSNPHGYLPTHYEKVQML 120
Query: 1058 LSDRFLGFYMV 1068
LSDRFLGFYMV
Sbjct: 121 LSDRFLGFYMV 131
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 38,199,941
Number of extensions: 1597290
Number of successful extensions: 3065
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3063
Number of HSP's successfully gapped: 2
Length of query: 1130
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1018
Effective length of database: 11,187,833
Effective search space: 11389213994
Effective search space used: 11389213994
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 162 (67.0 bits)