BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0166000 Os06g0166000|AK060317
         (238 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0166000  Cyclin-like F-box domain containing protein         432   e-121

>Os06g0166000 Cyclin-like F-box domain containing protein
          Length = 238

 Score =  432 bits (1110), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/215 (100%), Positives = 215/215 (100%)

Query: 24  RLPADLLAHVLSLLPSFHDLSMAGGVSRRWRRAVERSLAGRRRMSFAGQRTGDDSTARFV 83
           RLPADLLAHVLSLLPSFHDLSMAGGVSRRWRRAVERSLAGRRRMSFAGQRTGDDSTARFV
Sbjct: 24  RLPADLLAHVLSLLPSFHDLSMAGGVSRRWRRAVERSLAGRRRMSFAGQRTGDDSTARFV 83

Query: 84  RAAVNLRDLDISRSCWGCQITDQGLIRISTADCVKNLTSISLWGLAGITDNGVIQLVSRA 143
           RAAVNLRDLDISRSCWGCQITDQGLIRISTADCVKNLTSISLWGLAGITDNGVIQLVSRA
Sbjct: 84  RAAVNLRDLDISRSCWGCQITDQGLIRISTADCVKNLTSISLWGLAGITDNGVIQLVSRA 143

Query: 144 HSLQHLNIGGTFITDESLYAVAKSCINLKSIIVWSCRHVTEAGLVALVGGCRRLECINVG 203
           HSLQHLNIGGTFITDESLYAVAKSCINLKSIIVWSCRHVTEAGLVALVGGCRRLECINVG
Sbjct: 144 HSLQHLNIGGTFITDESLYAVAKSCINLKSIIVWSCRHVTEAGLVALVGGCRRLECINVG 203

Query: 204 GMRVPPESFAGLLAIRPALQIRSIPQILNANVQVS 238
           GMRVPPESFAGLLAIRPALQIRSIPQILNANVQVS
Sbjct: 204 GMRVPPESFAGLLAIRPALQIRSIPQILNANVQVS 238



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,231,831
Number of extensions: 280960
Number of successful extensions: 1457
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1469
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 140
Effective length of database: 11,918,829
Effective search space: 1668636060
Effective search space used: 1668636060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)