Os06g0166000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os06g0166000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.12 | 0.37 | 12.1 | -0.538 | 1.29 | -1.05 | 0.653 | -0.489 | 0.0661 | 5.12 | 0.8398 | 250 | -- | -- |
| 62.5 | 0.368 | 12.1 | -0.533 | 1.31 | -1.01 | 0.865 | -- | 0.0651 | 5.04 | 1.112 | 249 | -- | -- |
| 62.95 | 0.37 | 12.1 | -0.536 | 1.28 | -1.06 | -- | -0.799 | 0.0572 | 5.14 | 0.4195 | 248 | -- | -- |
| 64.42 | 0.374 | 12.1 | -0.539 | 1.3 | -1.04 | -- | -- | 0.0641 | 5.13 | 0.5434 | 248 | -- | -- |
| 94.45 | 0.453 | 12.1 | -0.438 | -- | -2.13 | -- | -0.748 | 0.128 | -- | -2.337e-06 | 424 | -- | -- |
| 76.04 | 0.409 | 12.1 | -0.566 | 1.84 | -- | 0.886 | -- | -0.00302 | 4.17 | -- | -- | -- | -- |
| 78.25 | 0.414 | 12.1 | -0.576 | 1.84 | -- | -- | -- | -0.0079 | 4.17 | -- | -- | -- | -- |
| 94.97 | 0.454 | 12.1 | -0.44 | -- | -2.18 | -- | -- | 0.197 | -- | -1.401 | 425 | -- | -- |
| 72.04 | 0.395 | 12.1 | -- | 1.27 | -1.1 | -- | -- | 0.115 | 5.29 | -0.0001296 | 248 | -- | -- |
| 261.84 | 0.756 | 12.1 | -0.502 | -- | -- | -- | -- | 0.0411 | -- | -- | -- | -- | -- |
| 86.99 | 0.436 | 12.1 | -- | 1.83 | -- | -- | -- | 0.0562 | 4.18 | -- | -- | -- | -- |
| 100.06 | 0.466 | 12.1 | -- | -- | -2.2 | -- | -- | 0.249 | -- | -4.009 | 430 | -- | -- |
| 268.48 | 0.765 | 12.1 | -- | -- | -- | -- | -- | 0.0968 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.37 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 3 | 59.66 | radiation | 40 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 9 | 60.05 | radiation | 20 | 270 | < th | dose independent | rect. | 24 | 22 |
| 12 | 60.18 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 13 | 60.23 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 20 |
| 21 | 60.48 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 22 | 60.51 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 1 | 20 |
| 32 | 60.75 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 3 | 19 |
| 42 | 60.94 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 18 |
| 46 | 60.98 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 4 | 18 |
| 48 | 61.02 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 58 | 61.15 | temperature | 25 | 270 | > th | dose dependent | rect. | 3 | 11 |
| 59 | 61.16 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 12 |
| 65 | 61.17 | radiation | 1 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 68 | 61.19 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 77 | 61.30 | radiation | 40 | 270 | < th | dose dependent | sin | 3 | NA |
| 80 | 61.35 | radiation | 1 | 270 | > th | dose dependent | sin | 3 | NA |
| 83 | 61.37 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 92 | 61.45 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 123 | 61.66 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 130 | 61.70 | radiation | 1 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 178 | 61.92 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 188 | 61.95 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 204 | 62.01 | radiation | 40 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 259 | 62.17 | radiation | 40 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 287 | 62.27 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 12 |
| 329 | 62.40 | radiation | 1 | 270 | > th | dose dependent | no | NA | NA |
| 412 | 62.46 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 415 | 62.47 | radiation | 40 | 270 | < th | dose independent | rect. | 10 | 11 |
| 432 | 62.54 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 451 | 62.56 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 10 |
| 502 | 62.67 | radiation | 10 | 270 | < th | dose independent | sin | 1 | NA |
| 504 | 62.67 | radiation | 40 | 270 | < th | dose dependent | no | NA | NA |
| 577 | 62.90 | radiation | 40 | 270 | < th | dose dependent | rect. | 9 | 10 |
| 636 | 63.03 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 17 |
| 654 | 63.07 | radiation | 40 | 270 | < th | dose independent | rect. | 8 | 23 |
| 682 | 63.15 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 12 |
| 687 | 63.16 | radiation | 20 | 270 | < th | dose independent | rect. | 8 | 23 |
| 700 | 63.20 | radiation | 20 | 270 | < th | dose independent | rect. | 9 | 10 |
| 722 | 63.27 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 723 | 63.27 | radiation | 10 | 270 | < th | dose independent | rect. | 13 | 22 |
| 724 | 63.27 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 23 |
| 779 | 63.36 | radiation | 10 | 270 | < th | dose independent | rect. | 7 | 12 |
| 823 | 63.46 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 824 | 63.46 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 950 | 63.53 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |