BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0161400 Os06g0161400|J043031H21
(625 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0161400 Protein of unknown function DUF1618 domain con... 1134 0.0
Os01g0245532 87 3e-17
Os03g0333800 Protein of unknown function DUF1618 domain con... 69 1e-11
Os01g0245700 Protein of unknown function DUF1618 domain con... 68 2e-11
>Os06g0161400 Protein of unknown function DUF1618 domain containing protein
Length = 625
Score = 1134 bits (2932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/625 (91%), Positives = 569/625 (91%)
Query: 1 MESRGEGDGEGASIXXXXXXXXXXXXXXXXXXXXXXVKWAMLFTLPIPVTDEELPPTRDL 60
MESRGEGDGEGASI VKWAMLFTLPIPVTDEELPPTRDL
Sbjct: 1 MESRGEGDGEGASIRRGRGRVMGSEGEGEGEGEGEEVKWAMLFTLPIPVTDEELPPTRDL 60
Query: 61 AMSKQPPPLISFLCLPQRSLGEAAHCFVEIVCADSAGRLLLXXXXXXXXXXXXXXXXXXX 120
AMSKQPPPLISFLCLPQRSLGEAAHCFVEIVCADSAGRLLL
Sbjct: 61 AMSKQPPPLISFLCLPQRSLGEAAHCFVEIVCADSAGRLLLSAKPRPAPAATTSAALPPR 120
Query: 121 QGVIIICDATNLKVMRLPLPVGATCDDNERGFPCLAVLSDPRDEEDGDAYIVVLLHADAS 180
QGVIIICDATNLKVMRLPLPVGATCDDNERGFPCLAVLSDPRDEEDGDAYIVVLLHADAS
Sbjct: 121 QGVIIICDATNLKVMRLPLPVGATCDDNERGFPCLAVLSDPRDEEDGDAYIVVLLHADAS 180
Query: 181 GAFQEVLCYESKTGGVLDTQTHDQDWSDTETHDQDWSEKLLSCNSQQPPRGWHRHSHSHR 240
GAFQEVLCYESKTGGVLDTQTHDQDWSDTETHDQDWSEKLLSCNSQQPPRGWHRHSHSHR
Sbjct: 181 GAFQEVLCYESKTGGVLDTQTHDQDWSDTETHDQDWSEKLLSCNSQQPPRGWHRHSHSHR 240
Query: 241 AIPLDGEVCWIDAAYGLVLCEVLLEDPRLRYVQLPEGCTMDEDDDMGSPAVVEKLRRRCI 300
AIPLDGEVCWIDAAYGLVLCEVLLEDPRLRYVQLPEGCTMDEDDDMGSPAVVEKLRRRCI
Sbjct: 241 AIPLDGEVCWIDAAYGLVLCEVLLEDPRLRYVQLPEGCTMDEDDDMGSPAVVEKLRRRCI 300
Query: 301 GVSDGKLRYLQIDSSGQSIAVWTLMTLKDVTFWEHTFSVDLVSLRADKSFQEAGLNPHIF 360
GVSDGKLRYLQIDSSGQSIAVWTLMTLKDVTFWEHTFSVDLVSLRADKSFQEAGLNPHIF
Sbjct: 301 GVSDGKLRYLQIDSSGQSIAVWTLMTLKDVTFWEHTFSVDLVSLRADKSFQEAGLNPHIF 360
Query: 361 PSVAGIHPIDTSTIFLVQNSIIFSVSSDTTTSSIKVGDHHKFLLNENEITPSLFLLPWLV 420
PSVAGIHPIDTSTIFLVQNSIIFSVSSDTTTSSIKVGDHHKFLLNENEITPSLFLLPWLV
Sbjct: 361 PSVAGIHPIDTSTIFLVQNSIIFSVSSDTTTSSIKVGDHHKFLLNENEITPSLFLLPWLV 420
Query: 421 HDPADLLPQETPPRSNCSXXXXXXXXXXXXXXXGIVWLSDNHEVVTHVGDVIDFLTIPAG 480
HDPADLLPQETPPRSNCS GIVWLSDNHEVVTHVGDVIDFLTIPAG
Sbjct: 421 HDPADLLPQETPPRSNCSKRWLRALKLKQALKRGIVWLSDNHEVVTHVGDVIDFLTIPAG 480
Query: 481 GSFRSAAICVKKVGSYCSKTGKILKFHNSRLHANDPVKALPMEDFQIINDVDEDVESLSM 540
GSFRSAAICVKKVGSYCSKTGKILKFHNSRLHANDPVKALPMEDFQIINDVDEDVESLSM
Sbjct: 481 GSFRSAAICVKKVGSYCSKTGKILKFHNSRLHANDPVKALPMEDFQIINDVDEDVESLSM 540
Query: 541 EGIHIVKNVNEARRFINQWISCQQPHSCIMDVAKSVGVEECINILTYLGGENATFMLMNS 600
EGIHIVKNVNEARRFINQWISCQQPHSCIMDVAKSVGVEECINILTYLGGENATFMLMNS
Sbjct: 541 EGIHIVKNVNEARRFINQWISCQQPHSCIMDVAKSVGVEECINILTYLGGENATFMLMNS 600
Query: 601 PTFLEKTGNNLRKSSDLKEWVYLKE 625
PTFLEKTGNNLRKSSDLKEWVYLKE
Sbjct: 601 PTFLEKTGNNLRKSSDLKEWVYLKE 625
>Os01g0245532
Length = 396
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 97/368 (26%), Positives = 150/368 (40%), Gaps = 67/368 (18%)
Query: 39 WAMLFTLPIPVTDE-ELPPTRDLAMSKQPPPLISFLCLPQRSLGE--AAHCFVEIVCADS 95
W +L ++P DE PP +L ++ PP S + +P+R + A + + AD
Sbjct: 23 WVILVSVPHVAHDEFHFPPGTELRLNFGAPPFASRITVPRRIAPDRKAIDNYPYLAAADE 82
Query: 96 A-GRLLLXXXXXXXXXXXXXXXXXXXQGV---------IIICDATNLKVMRLPLP--VGA 143
GRLLL + + ICD T + RLP P A
Sbjct: 83 RHGRLLLYATQGPDPEPRPALDAFYLRPLGVHHGFAKAYFICDTTTREASRLPDPDHPFA 142
Query: 144 TCDDNERGFPCLAVLSDPRDEEDGDAYIVVLLHADASGAFQEVLCYESKTGGVLDTQTHD 203
G C ++ Y+ L A ASG +L Y S + +D +
Sbjct: 143 ILYPGNVGLLCYSI----------SFYVAELQPAPASGT-ATLLLYRSDSDAWVDEEL-- 189
Query: 204 QDWSDTETHDQDWSEKLLSCNSQQPPRGWHRHSHSHRAIPLDGEVCWIDAAYGLVLCEVL 263
HD+ W + SH R + W+D +YGL+ C+V+
Sbjct: 190 ----SYPPHDRPWGGNGMV-------------SHQDR-------LWWVDLSYGLLTCDVV 225
Query: 264 LED--PRLRYVQLPEGCTMDEDDDMGSPAVVEKLRRRCIGVSDGKLRYLQIDSSGQS--- 318
D P L YV LP+ D + G+P + +RRC+GVS G+LRY+QID
Sbjct: 226 YGDDPPDLHYVPLPQ----DSELPAGTPDLE---KRRCVGVSAGRLRYVQIDDEPDGDPI 278
Query: 319 IAVWTLMTLKDVTFWEHTFSVDLVSLRADKSFQEAGLNPHIFPSVAGIHPIDTS-TIFLV 377
+ +WTL+ +D W + V++ D++++ L P P+VA IHP ++
Sbjct: 279 VRMWTLLD-EDAGEWGFDCAASFVAIWDDEAYKATKL-PRQVPAVALIHPTGPGDVVYFF 336
Query: 378 QNSIIFSV 385
S IF+V
Sbjct: 337 LRSRIFAV 344
>Os03g0333800 Protein of unknown function DUF1618 domain containing protein
Length = 421
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 143/358 (39%), Gaps = 57/358 (15%)
Query: 39 WAMLFTLPIPVTDEE----LPPTRDLAMSKQPPPLISFLCLPQR-SLGEAAHCFVEIVCA 93
WA+L +P V +E PP D++++++ P S L +P+ SL + +V A
Sbjct: 9 WAILAAIPNVVGYKEAKRIFPPGTDISVARKEVPRASVLTVPRHISLPACLGLYPYVVAA 68
Query: 94 DSAGRLLLXXXXXXXXXXXXXXXXXXXQGVIIICDATNLKVMRLPLPVGATCDDNERGFP 153
D +G LLL ICDA +V+ L D + P
Sbjct: 69 DRSGLLLLGTHPVTSASAMVSYH---------ICDAHTGEVVSL--------RDCKPMRP 111
Query: 154 CLAVLSDPRDEEDGDAYIVVLLHADASGAFQ-EVLCYESKTGGVLDTQTHDQDWSDTETH 212
G A + +++ D + + C + TGG +
Sbjct: 112 MTFY---------GAANVGLIIKDDGCMVAELQPGCKGTSTGGATLLSYKVGECCK---- 158
Query: 213 DQDWSEKLLSCNSQQPPRGWHRHSHSHRAIPLDGEVCWIDAAYGLVLCEVLLEDPRLRYV 272
W E+ L+C+ P + SH G + W+D +YGL+ C+ E+P L +V
Sbjct: 159 ---WRERELTCSPPLPLDWYPEGVVSH-----GGMLWWVDLSYGLLACDPFAEEPNLIHV 210
Query: 273 QLPEGCTMDEDDDMGSPAVVEKLRRRCIGVSDGKLRYLQIDSSGQSIAVWTLMTLKDVTF 332
LP+ D++ V + RC+ VS G+L Y+QI + + V + L + T
Sbjct: 211 PLPQ-----VPDELPVDDQVNRGAHRCVKVSGGRLMYVQIHGN-PVVPVVSTWLLDESTC 264
Query: 333 ------WEHTFSVDLVSLRADKSFQEAGLNPHIFPSVAGIHPIDTSTIFLVQNSIIFS 384
W S L L D+S+ + L P P++A HP D + ++ S IF+
Sbjct: 265 SPGEWEWNPQLSAPLAELWIDQSYVDTML-PLTIPALALPHPTDPNRVYFFLKSCIFA 321
>Os01g0245700 Protein of unknown function DUF1618 domain containing protein
Length = 522
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 27/158 (17%)
Query: 246 GEVCWIDAAYGLVLCEVLLEDPRLRYVQLPEGCTMDEDDDMGSPAVVEKLRRRCIGVSDG 305
G + W+D ++GL+ C+V P +R+V LPEGC + D + + RC+ VSDG
Sbjct: 227 GMLWWVDLSFGLLTCDVFAAKPDMRFVPLPEGCKLPYSSD------ADHAKHRCVNVSDG 280
Query: 306 KLRYLQI----DSSGQS------IAVWTLMT--LKDVTFW--EHTFSVDLVSLRADKSFQ 351
+L ++QI ++G+ I++WTL + + W H VD + D
Sbjct: 281 ELAFVQIHDYDTAAGRGAPSTIMISMWTLQQSDAGEESVWSLRHRVRVDEI---WDHVTY 337
Query: 352 EAGLNPHIFPSVAGIHPIDTSTIFLVQ----NSIIFSV 385
+ P P +A +HP + +F Q NS +F+V
Sbjct: 338 RKTMMPRRVPVLALLHPKELGVVFFFQITSRNSWMFAV 375
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,281,507
Number of extensions: 951562
Number of successful extensions: 2071
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2089
Number of HSP's successfully gapped: 4
Length of query: 625
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 518
Effective length of database: 11,448,903
Effective search space: 5930531754
Effective search space used: 5930531754
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)